BAC Information

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BAC

Clone NameMSMg01-163I11
Chromosome6 (Build37)
Map Location 95,624,358 - 95,624,665
singlet/doubletsinglet
Overlap geneSuclg2
Upstream geneLrig1, LOC625941, EG665865, LOC100043276, LOC100043680, Kbtbd8, LOC435912
Downstream geneLOC665886, LOC545867, C630007B19Rik, LOC100043685, 1700123L14Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-163I11.T7 (MSMg01no163_i11.b1)MSMg01-163I11.TJ (MSMg01no163_i11.g1)
ACCAG362304AG362305
length725814
length of high quality
(start - end)
311 (44 - 354)122 (75 - 196)
definitionCHROMAT_FILE: MSMg01no163_i11.b1 PHD_FILE: MSMg01no163_i11.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:31:08 2005CHROMAT_FILE: MSMg01no163_i11.g1 PHD_FILE: MSMg01no163_i11.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:31:08 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
TATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAA
TTCCCCATGTAGCCAAGGCTGACTTTCAACTTACAGCAAATACAAGGATT
AGAAGACTACACACCCACACATCTAGGTTATCCATGCTGGGCTTCACCTG
GTGCTCCCTATATACAAATGACTTCTATATACAACACTCCATATCTAAGT
CACATCCCTGGCCAGTGTTATGTCCTTAACTCTAACTGAATACTTAGGGA
TATCTGATTACCATGAAGTTCTAAAAGCTTCCATGTCCACTTCAACATCA
CTTCATTTAATTCGCCTAACAAGGCTGGCAGAAATCCATTCCATGGAAGA
GCAAATTTTTTCTCACCCCCCGCCAACACCTTGCTCAGGGTGAGGATGAA
GAAGAATCACACCCCCCACCCAAAAGAGACTGACTGCATGCAGAGCCTTT
GATAGTCAGTTGAGAGGAAGCTGGTGACAACAGAGGCAGGGAGCCAACTG
AGGAAGGGGATAGGCGTTGTGGCGGGGTGGAAAGCTTTGGCTGCAGGGAG
GCATGGGGCTGTGGTAAATGAGCACAAGGTTCAGTGCGAAAACTTGGAGC
CCTGGGTGAAAAAAGTTGCTGGATGGGTTTCAACAAGTCCAAGAATTAAG
ATTCTCAGAGATACTGCCTCTTTCTTTTTATCCTGACTTCAGCAGAACAC
ACCCCACTTTTTTAATCCACATATT
AAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXTAAACTTTGGTTTTTGTCCTTAAACA
GACACATGGACCACCAGTGTAAAACGGTTCCCATGCAGTTATTATGGTGG
GCTATCAAGGGTAAGGGAGGGGAGGGGAGAGGAGAAAAGGGGAGAGGCTC
TTTTCTCCCCCTCTTTGCCACCCCCCCTCTATTTTGTTTTTTTTTTTTTT
TTTCTATCTTTATCATATTTTCTCTTCCCTCCACCACACCACAACTTACC
CCTCTTTCAACTCGAGACTCTTTTTTTTTTTTTATGACTAGTGACACACG
GAAAAGGAGTTTTTTGATGATTTTCCCCANGGCAAAACCCCCGTTTTTTT
TTATTTTTTTGGCCGTGTTGTGGCCCCCCCCCTTTTTAAAAAAAAAAATA
TAAAAAGCTGGGGGGGGGGTGTGGTAGACTTCTCTCCTTCCCCGTCCGTT
TCTTCGTATCTTTTTGTTCCCTTGTCTTCCATTTTGCTTGTATTTTTTAA
GAAACCAACTTTTTGTTCTTACCCTCTTCTCTTTTACGCGTTATGTAGGA
AATTTTTATTTTTTTTTTTTTTACTTTTTCCTTTTCATATGTTTGTTCTT
ATTGCGGACAGTTTTTCTTTCTTACCCTCTTTCCCTCTCTTTACCCCCTA
TTTTCCGGCACTATTTTCGTTTTCCACTTTCCATATATTTTTTTTACCCC
GAATCATCTTTTTTCCGCCCCCATCCCTTTTATCTATTAACCTTTTTCTT
TATTTCCCCACTCT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no163_i11.b1 MSMg01no163_i11.b1 CHROMAT_FILE:
MSMg01no163_i11.b1 PHD_FILE: MSMg01no163_i11.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:31:08 2005
         (311 letters)



>mm_chr6_95624155_95624865
          Length = 711

 Score =  588 bits (304), Expect = e-172
 Identities = 307/308 (99%)
 Strand = Plus / Plus

                                                                       
Query: 4   ggaattccccatgtagccaaggctgactttcaacttacagcaaatacaaggattagaaga 63
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 204 ggaattccccatgtagccaaggctgactttcaacttacagcaaatacaaggattagaaga 263

                                                                       
Query: 64  ctacacacccacacatctaggttatccatgctgggcttcacctggtgctccctatataca 123
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 264 ctacacacccacacatctaggttatccatgctgggcttcacctggtgctccctatataca 323

                                                                       
Query: 124 aatgacttctatatacaacactccatatctaagtcacatccctggccagtgttatgtcct 183
           ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 324 aatgacttctatatacaacactccatatctaagtcacatccctggccagagttatgtcct 383

                                                                       
Query: 184 taactctaactgaatacttagggatatctgattaccatgaagttctaaaagcttccatgt 243
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 384 taactctaactgaatacttagggatatctgattaccatgaagttctaaaagcttccatgt 443

                                                                       
Query: 244 ccacttcaacatcacttcatttaattcgcctaacaaggctggcagaaatccattccatgg 303
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 444 ccacttcaacatcacttcatttaattcgcctaacaaggctggcagaaatccattccatgg 503

                   
Query: 304 aagagcaa 311
           ||||||||
Sbjct: 504 aagagcaa 511


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 15
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 311
Length of database: 711
Length adjustment: 9
Effective length of query: 302
Effective length of database: 702
Effective search space:   212004
Effective search space used:   212004
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)