BAC Information

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BAC

Clone NameMSMg01-163K03
Chromosome6 (Build37)
Map Location 10,204,649 - 10,204,931
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC330264
Downstream geneLOC100040285, LOC667650, AA545190
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-163K03.T7 (MSMg01no163_k03.b1)MSMg01-163K03.TJ (MSMg01no163_k03.g1)
ACCAG362374AG362375
length715720
length of high quality
(start - end)
564 (48 - 611)283 (78 - 360)
definitionCHROMAT_FILE: MSMg01no163_k03.b1 PHD_FILE: MSMg01no163_k03.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:31:16 2005CHROMAT_FILE: MSMg01no163_k03.g1 PHD_FILE: MSMg01no163_k03.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:31:16 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
TCTCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGC
GGAATTCTCAGCTCCTCTTGTACCATGCCTGCATAGAAGCTGCCATGCTC
TAACCTTGATGATAAAGGACTGACTGTCTGAACCTATAAGCTAGCCCCCA
ACTAAATGTTGTGATCATAAGAGTTGCCTTGGTCATGGTGTGTGTTCACA
GCAGTAAAACCCTAACTGAGACAATATCTTTTACACTGGAGAGTCTCTCT
TCTATCTCTTGCATTCTGTGTATGATGCTTACATTTGTAATTCCTGGCCT
CTTACCAAGCTTTCTGTTACAAGGGATGCCTCCATTTGTATTTTCTTTAT
TGTTTCTTCTTCTACTTTTAGGTCTTGGACTGTTTTGTTTAATTTCTTCA
CCTATTTGATTGTGTTTCCCTATATTTCATTAAGGGATTTATTTGTTTCC
TCTTTGAGGGCTTCTTCCTATTTACCTGTGTTTTCCTGTATTTCTTTCAG
TGAGATATTCATATCTTTCTTAAAGGTCTCTGTTTTCTTCAAGAGATAGG
AATTTCAGTCAGCTTCCTGATTTTCTGGTGTATTGGTATATCCAGTGCTT
GCTGTGGTGGGAGAACTGGGTTCTGGTGATGCCAAAGTTTATTGGCTTCT
ATTGCTTATCGTCTTGTGCTTGTCTTTCACCACCTGATTACCTCCGGAGT
TAGTTGCTCTGGTTT
CCGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXACTAATTCAGAGTACTTGGAGAA
ATAAAGCTGTTAATAACTGGAACATCTCTTCTATGAGTTCCAGCTTTTAT
AGTGTTGTAAAGTACTGTGGAAGGTGCCATGATGGTAAAATTATCAATAT
TTCTATGCATGTGGAAAGTGTGTGAATGTTAATGTCTAGACTAGCAAGAT
ATTGCCAGTTGTGGAAAGGTGGTACTTTTAAGTTGGGCATAACCAATAGT
TCTCTAATTGTAATTATGACACTGACCTTAAAAGGAATTTCTGGCCTAGC
TCTATAAATATTTTTTTTTACCCCGCCCCCCCCCATGACATATATCACAG
AGGACTACTACTCACATTTTGCTAAATTATAGAATTCAACTTCTATTTGA
ATACTTGCCCTTAACCCCATGAATAAGTATAGCTGTCACCTCTAATTAAA
GAATCATCTTTTCCAGCAGATGAGGATTAGTGCAGAGATGTACAACTAGT
CAAATATAGAGAATAAGTTACTCTGAGATGCTTATTTTCAAATGTAGCAT
CTTTACTGCAAGTCCTACACATAAGGCTCATGGAATATCTTGAAGAAAAG
AGACTGAATTTTTAAAGCCCAAGGTTCAGAACAACAGCTACCAAAGTGTG
CCTTCTGTACACATGACACN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no163_k03.g1 MSMg01no163_k03.g1 CHROMAT_FILE:
MSMg01no163_k03.g1 PHD_FILE: MSMg01no163_k03.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:31:16 2005
         (283 letters)



>mm_chr6_10204449_10205131
          Length = 683

 Score =  547 bits (283), Expect = e-160
 Identities = 283/283 (100%)
 Strand = Plus / Minus

                                                                       
Query: 1   actaattcagagtacttggagaaataaagctgttaataactggaacatctcttctatgag 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 483 actaattcagagtacttggagaaataaagctgttaataactggaacatctcttctatgag 424

                                                                       
Query: 61  ttccagcttttatagtgttgtaaagtactgtggaaggtgccatgatggtaaaattatcaa 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 423 ttccagcttttatagtgttgtaaagtactgtggaaggtgccatgatggtaaaattatcaa 364

                                                                       
Query: 121 tatttctatgcatgtggaaagtgtgtgaatgttaatgtctagactagcaagatattgcca 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 363 tatttctatgcatgtggaaagtgtgtgaatgttaatgtctagactagcaagatattgcca 304

                                                                       
Query: 181 gttgtggaaaggtggtacttttaagttgggcataaccaatagttctctaattgtaattat 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 303 gttgtggaaaggtggtacttttaagttgggcataaccaatagttctctaattgtaattat 244

                                                      
Query: 241 gacactgaccttaaaaggaatttctggcctagctctataaata 283
           |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 243 gacactgaccttaaaaggaatttctggcctagctctataaata 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 15
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 283
Length of database: 683
Length adjustment: 9
Effective length of query: 274
Effective length of database: 674
Effective search space:   184676
Effective search space used:   184676
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)