BAC Information

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BAC

Clone NameMSMg01-163K14
Chromosome6 (Build37)
Map Location 35,220,997 - 35,221,286
singlet/doubletsinglet
Overlap geneSlc13a4
Upstream geneAkr1b3, Akr1b8, LOC664942, 2310005E10Rik, Akr1b7, Bpgm, LOC100039184, Cald1, Agbl3, Tmem140, 3110062M04Rik, 9530020G05Rik, Stra8, 2010107G12Rik, Cnot4, Nup205, 1810058I24Rik
Downstream geneBC064033, 1700065J11Rik, Mtpn, LOC100039312, LOC100039327, 9330158H04Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-163K14.T7 (MSMg01no163_k14.b1)MSMg01-163K14.TJ (MSMg01no163_k14.g1)
ACCAG362394AG362395
length712719
length of high quality
(start - end)
326 (48 - 373)287 (80 - 366)
definitionCHROMAT_FILE: MSMg01no163_k14.b1 PHD_FILE: MSMg01no163_k14.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:31:18 2005CHROMAT_FILE: MSMg01no163_k14.g1 PHD_FILE: MSMg01no163_k14.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:31:18 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
CCCTTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGC
GGAATTCAGCTGAGTTCTTGTGTGTGTCTGAGACTTTTGTATCTCAGACT
CTGTAGATTGGGACTATTATAAAGCTAGTCACTTTTTGTCATACCAGCTG
CGGTTGTACACAACACCAGTAACCTCAGCACTCACGAGGCTGATGCAGGA
GGAACTATATTGGTATGCTAATCTAGACTATACATCATGAGTTTAAGACC
AGCCTGGGCAACTTAGTGAGACCCTGTCCAAAACCAAAAGGTTTTTCTCT
AAATAGAGAATCTAGATGTTTATTTTTGGACTTTCCTTGCCTTCCTTTGT
CATGCCAATCCCTTTTTTTTTCCTGTCANGCCCACTCTCTTCTTCTCCCA
ACGGACTGGGAAATGCCCATCTAGATTAGATCTCTTCCTATCAGAGAGAA
CTCGTTAGCCCTTTGGCCCTCTACCACTGTTGGGTTGCATAGCATTAAAC
TGAACTGGAAATGTCTTCAGAATTCTATCACAGGAACAACTCAGACCAAT
TCAGAAGAGAATTTTCCCTAATGGTATTTCAATAAAGTTTTCACCTCTCA
GATCAGATAGAAAATATCTTGCTAAGAGGGGAGCTCAGGCAAATCTCTGC
TTGTGCATGATGTCCTAGAATTGATAGAATATGTATATTTTAAGGAGGCG
GATACATGAGAA
CACGAATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXCAGGACAGCCAGGGCTACATG
GAGAAACCCTGTCTTGAAAAGCCAAAAAAAAAAAAAAAAAAAAAAAAGTC
TCCAGTGCTGACTTGCAGGGTGACAGAGGAGGCAGATAGGGACATCTGAG
CTGAGAGCCAAGGGTAGACATGTGAGCTGGTATTCCAGGGAGCAGGAAGG
ATTCTTCTGTAGGAGATTGGTAAGGGCCTTCATGTCCTGTTTCCAGGCGC
AGCACCAAGTACATTACTCTGGGGGCTTTGTCAACAGGCTAAGATCTGGC
TTACTTTGCCCATTACTGATTTTTCCGCGGCCATGCCGCCAGGCCAATGA
TTGGAGGTGGTAACTGTTGTATACTTGTCTTCCTGAAATGGCTTCATTAT
GCAGCCCAGGCTACCCACAGATAAATTAATTCTGCTTTCTCTTTTTGAAA
AGTATTTCTAAACCCTTGACATAATTTTATTTTCCTAATCGCCATTTGAG
GACAATTCACTCTTTAAACTTTGGGCGGAACACCAACCACTGAAAGGGGT
GCTCAGCGAGAGAGGAATAGCTACAGAAACCATTTCCTGGACCAAGCTTG
GGGCCCTACCTGGCCATCTGCCAGTCTTATCCACTCACCAGGGTACAAAG
GATGGGCAAGATGATGGTG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no163_k14.g1 MSMg01no163_k14.g1 CHROMAT_FILE:
MSMg01no163_k14.g1 PHD_FILE: MSMg01no163_k14.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:31:18 2005
         (287 letters)



>mm_chr6_35220800_35221486
          Length = 687

 Score =  545 bits (282), Expect = e-160
 Identities = 287/290 (98%), Gaps = 3/290 (1%)
 Strand = Plus / Plus

                                                                       
Query: 1   caggacagccagggctacatggagaaaccctgtcttgaaaagccaaaaaaaaaaaaaaaa 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 198 caggacagccagggctacatggagaaaccctgtcttgaaaagccaaaaaaaaaaaaaaaa 257

                                                                       
Query: 61  aaaaaaaa---gtctccagtgctgacttgcagggtgacagaggaggcagatagggacatc 117
           ||||||||   |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 258 aaaaaaaaaaagtctccagtgctgacttgcagggtgacagaggaggcagatagggacatc 317

                                                                       
Query: 118 tgagctgagagccaagggtagacatgtgagctggtattccagggagcaggaaggattctt 177
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 318 tgagctgagagccaagggtagacatgtgagctggtattccagggagcaggaaggattctt 377

                                                                       
Query: 178 ctgtaggagattggtaagggccttcatgtcctgtttccaggcgcagcaccaagtacatta 237
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 378 ctgtaggagattggtaagggccttcatgtcctgtttccaggcgcagcaccaagtacatta 437

                                                             
Query: 238 ctctgggggctttgtcaacaggctaagatctggcttactttgcccattac 287
           ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 438 ctctgggggctttgtcaacaggctaagatctggcttactttgcccattac 487


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 29
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 287
Length of database: 687
Length adjustment: 9
Effective length of query: 278
Effective length of database: 678
Effective search space:   188484
Effective search space used:   188484
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)