BAC Information

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BAC

Clone NameMSMg01-163O08
Chromosome6 (Build37)
Map Location 10,899,726 - 10,900,035
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC330264, LOC100040285, LOC667650
Downstream geneAA545190, Ndufa4, Phf14
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-163O08.T7 (MSMg01no163_o08.b1)MSMg01-163O08.TJ (MSMg01no163_o08.g1)
ACCAG362552AG362553
length717721
length of high quality
(start - end)
314 (48 - 361)283 (78 - 360)
definitionCHROMAT_FILE: MSMg01no163_o08.b1 PHD_FILE: MSMg01no163_o08.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:31:35 2005CHROMAT_FILE: MSMg01no163_o08.g1 PHD_FILE: MSMg01no163_o08.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:31:36 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
ATCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGC
GGAATTCAATGATTATCTAAACAAGCCCTCCACTGAGTCACTGGAACGTT
CCTGCCTTTGTGGATGTAGGTGTACTTCACCACACCCTGATATTCATATG
GATGCTGAGGATCTGAGCTTAGGACCTCATGGGTTTGCTGAAGGTTGTCA
GCTGAGCTGGGTCCCTAGGTTTTCTTCTTTTAAAATTTATTTTTATTCTT
GGGTGTTTGTTTTAATGTCATTTTGTGTGAGATTCACACTTGACCACTGT
ATCTAATTATTCTTGCCTACCTGTTACCTTCAAATTTCTTCCTTGTCCCA
GAATTTTCTCTTTTTTATTCACCCACCCCCCCTATTAAATACTATTGTTA
CATACATGTGCATATGCGCATATGTGTGTATGAGCATATATGCTGACATG
TATTTACAACCTCCTAAGTCAGTGTAATTTTATTATTTTGTACATGTATC
TGGGGTTGACCGCATGGGACCATACAGCTTATGCAGGAGCTTGTCTCTCT
TACATGTTTCCTGTTGAAAACTTATTATCTCCAATCCTTAGCATGACCTC
TCAAAGCCTCTCTACCCCTAGCTTGTTATCAAACCCTTCAAAAGATGAAT
CCAGCTGACTGTTTTGAATTATTAGGGTTGGAACCCAGTCCCTCGATGGT
GCTATACAAGTGTTCTA
ACGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXAAGAGGCTGAACTCCAGAAAATC
AACCCCATTAAAAAATGGGGTACAGAGCTAAACAAGGAATTATCAACTGA
GGAATACCAAAGTGCTGAGAAGCACTTGAAACAATGCTCAACATCCTTAA
TCAGGGAAATGCAAATCAAAACAATCCTGAGATTCTACCTCACACCAGTC
AGAAAGATAGAAAATTCAGGTGATAGTAGATGCTGGCCAGGATGTGGGGA
CAGAGGAACACTCTTCCATTGCTGATGGGATTGCAAGCTGGTGCAACCAC
TCTGGAATCATTTCTGGCTGCCCCTCACCACCCAATGTACATAGTACTAC
TGGAAGATCCAGCAATACCTCTCCTGGGCATATACCCAGGAGATGTTTCA
ACTTTTAATAAGGACAAATGTTACACTATGTTCATAGCGGCCTTATTTAT
AATAGCCAGAAGCTGGAAAGAACCCAGATGCCTCTCAAAAGAGGAATGGA
TATAGAAAGTGTGGTACATTTACACAATGGAGTACTACTCAGCTATTAAA
AACAATGATTTTATGAAATTCTTAGGCAAATGGATGGATCTAGAGGATAT
CATCCTGTGTGAGGTAACCCAATCACAAAAGAACACACATGATATGCATT
CACTGATAAGTGGATATTAGC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no163_o08.b1 MSMg01no163_o08.b1 CHROMAT_FILE:
MSMg01no163_o08.b1 PHD_FILE: MSMg01no163_o08.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:31:35 2005
         (314 letters)



>mm_chr6_10899523_10900236
          Length = 714

 Score =  584 bits (302), Expect = e-171
 Identities = 308/310 (99%)
 Strand = Plus / Minus

                                                                       
Query: 4   ggaattcaatgattatctaaacaagccctccactgagtcactggaacgttcctgcctttg 63
           |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 513 ggaattcaatgattatctaaacaagccctccattgagtcactggaacgttcctgcctttg 454

                                                                       
Query: 64  tggatgtaggtgtacttcaccacaccctgatattcatatggatgctgaggatctgagctt 123
           |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 453 tggatgtaggtgtacttcaccacaccctgatattcatacggatgctgaggatctgagctt 394

                                                                       
Query: 124 aggacctcatgggtttgctgaaggttgtcagctgagctgggtccctaggttttcttcttt 183
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 393 aggacctcatgggtttgctgaaggttgtcagctgagctgggtccctaggttttcttcttt 334

                                                                       
Query: 184 taaaatttatttttattcttgggtgtttgttttaatgtcattttgtgtgagattcacact 243
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 333 taaaatttatttttattcttgggtgtttgttttaatgtcattttgtgtgagattcacact 274

                                                                       
Query: 244 tgaccactgtatctaattattcttgcctacctgttaccttcaaatttcttccttgtccca 303
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 273 tgaccactgtatctaattattcttgcctacctgttaccttcaaatttcttccttgtccca 214

                     
Query: 304 gaattttctc 313
           ||||||||||
Sbjct: 213 gaattttctc 204


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 16
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 314
Length of database: 714
Length adjustment: 9
Effective length of query: 305
Effective length of database: 705
Effective search space:   215025
Effective search space used:   215025
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)