Query= MSMg01no163_o15.b1 MSMg01no163_o15.b1 CHROMAT_FILE:
MSMg01no163_o15.b1 PHD_FILE: MSMg01no163_o15.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:31:37 2005
(271 letters)
>mm_chr6_125336039_125336711
Length = 673
Score = 480 bits (248), Expect = e-140
Identities = 263/268 (98%), Gaps = 2/268 (0%)
Strand = Plus / Minus
Query: 4 ggaattctaggtgctcaccactgcatacatctgtggcagcagctgacgcttctccttctc 63
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 570 ggaattctaggtgctcaccactgcatacatctgtggcagcagctgacacttctccttctc 511
Query: 64 ctactccctcttcttctcttcttcctcctcctccccttcatcttccttggttatgctggg 123
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 510 ctactccctcttcttctcttcttcctcctcctccccttcatcttccttggttatgctggg 451
Query: 124 cctgttatgctgcccagacaacaggctggtcctgaattcctggactctatccaccccacc 183
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 450 cctgttatgctgcccagacaacaggctggtcctgaattcctggactctatccaccccgcc 391
Query: 184 cccttaggaga-atgccactgcacctggccttttgcactctaaaa-caaccaaccagtga 241
||||||||||| ||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 390 cccttaggagacatgccactgcacctggccttttgcactctaaaaacaaccaaccagtga 331
Query: 242 acacgggagcagcaaggacagtgaggga 269
||| ||||||||||||||||||||||||
Sbjct: 330 acatgggagcagcaaggacagtgaggga 303
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 12
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 271
Length of database: 673
Length adjustment: 9
Effective length of query: 262
Effective length of database: 664
Effective search space: 173968
Effective search space used: 173968
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
| Query= MSMg01no163_o15.g1 MSMg01no163_o15.g1 CHROMAT_FILE:
MSMg01no163_o15.g1 PHD_FILE: MSMg01no163_o15.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:31:37 2005
(282 letters)
>mm_chr6_125198081_125198762
Length = 682
Score = 449 bits (232), Expect = e-130
Identities = 259/272 (95%), Gaps = 9/272 (3%)
Strand = Plus / Plus
Query: 1 cctgtacactcgggagtgt--ctgcaatgagacctgggcacaggacttgctgtgtcacag 58
||||||||||||||||||| ||||||||||||||||||||||||||||||| | |
Sbjct: 206 cctgtacactcgggagtgtgtctgcaatgagacctgggcacaggacttgctgag-----g 260
Query: 59 gctaggcacctcccttgaacagacgctggcaagttgcctcccaaagtggctctaccagtg 118
| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 g--aggcacctcccttgaacagacgctggcaagttgcctcccaaagtggctctaccagtg 318
Query: 119 ttcattcctgccttctgcacaatgatatcactcagtgtccctcaactttctatcttaaaa 178
||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||
Sbjct: 319 ttcattcctgccttctgcacaatgatagcactcagtgtccctcaactttctgtcttaaaa 378
Query: 179 gcccttcccagcagctcaacaggagggaaaggttgtcctgttttggcacacattctcctg 238
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 379 gcccttcccagcagctcaataggagggaaaggttgtcctgttttggcacacattctcctg 438
Query: 239 atgacaggtgagcctgtgtgtggttcctttgt 270
||||||||||||||||||||||||||||||||
Sbjct: 439 atgacaggtgagcctgtgtgtggttcctttgt 470
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 282
Length of database: 682
Length adjustment: 9
Effective length of query: 273
Effective length of database: 673
Effective search space: 183729
Effective search space used: 183729
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
|
