BAC Information

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BAC

Clone NameMSMg01-164D01
Chromosome6 (Build37)
Map Location 41,565,124 - 41,565,749
singlet/doubletsinglet
Overlap geneEphb6
Upstream geneMgam, EG638904, Moxd2, LOC621968, BC048599, 1700074P13Rik, LOC194360, 1810009J06Rik, LOC100040208, 2210010C04Rik, LOC100039790, Tcrb-V8.2, LOC100040359, LOC100040333, Try4, 1810049H19Rik, Try10, Prss3, EG436523, EG386551, LOC100040233, Prss1, Prss2, Tcrb-V13
Downstream geneTrpv6, Trpv5, 1700034O15Rik, Kel, Olfr459, Pip, Sval2, Sval1, Sval3, Sva, Tas2r139, Tas2r144, Gstk1, Tmem139, Casp2, Clcn1, 6330503C03Rik, Zyx, Epha1, Tas2r143, Tas2r135, Tas2r126, Olfr458, Olfr457, Olfr456, LOC232745, EG546896, Eapa2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-164D01.T7 (MSMg01no164_d01.b1)MSMg01-164D01.TJ (MSMg01no164_d01.g1)
ACCAG362746AG362747
length788720
length of high quality
(start - end)
138 (52 - 189)626 (82 - 707)
definitionCHROMAT_FILE: MSMg01no164_d01.b1 PHD_FILE: MSMg01no164_d01.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:31:58 2005CHROMAT_FILE: MSMg01no164_d01.g1 PHD_FILE: MSMg01no164_d01.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:31:58 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
NNCCCTTCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XCGCGGAATTCTTTGTTCAGCTCTGAGCCCCATTTTTTAATGGGGTTATT
TGATTTTCTGGAGTCCACCTTCTTGAGTTCTTTATATATATTGGATATTA
GTCTCCTATCCGATTTGGGATAGGTAAAGATCCTTTCCTAATCTGTGGGC
GCCCTTTTTGCTTATTGATGGGTCTTTTGCTTTGCAGAACTTTGCATTTT
ATGANGCCCATTTACNATCTTGATCTTACNCCCAGCCCTTGCTGGCCTAT
TACCAATGCTGCTCTGTCCACCAACTTCTTCCCCTCTGTACCCATATCCT
TCCAGATTCCTCCTCCCACTCTCCANCTCTATTTTTTTTCCCCCCCCCCC
CCCCTTATGNTGCATTCCCCCTCCCCCCCCTTTTTTTATATNNNACCCCC
CCGAAACATTTAATNGAATCCTTTTGCGCTGGTGCTGGGGGGGGTTTTCT
CNNNNNNNNNNCCCCTTTTTTTCCTCTCTTTCTCTTTCCCCNCCCCCCCC
GGGGGCCCTTTTTTGCCCACCCTGAATAATCGGTNNTTTCNCNCNNNNTA
TCTCCCCCTNTTATCCCCGGGAATTCGAGGGTCCCCNTCTNNNNNTNTCC
CTCCNNNNTCTCCCNNCGGGTGCCCACTTTCGGGGGTTNATGGCCCATTT
TCCCACCCATCTTNTTCTCCCTTTTATTCTCCTTCTGGGTGGTTGGGTCT
CNNCCATGACTTTCTTTATTTTTTCCGTCCCTTTTTTT
CCCCACGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAAGTCACTCAAGTGAACTC
CAAAGACCTTTCACTTCCAGTGTTGTTAGGCCCCCTAAATCCTCACCCAT
TCCCTGATTTAATGTGTTGAGCTGAACTGAGACTCACCAGTGCAGGGAGC
CTCTGGTGGGTCCGAACTGGCCCTGTAGAAGCCTTGGAGACATGGGCAAA
CTGGGGCTGCAGGGTCAGGGGAGTGGCTGCGGGCTGGACACGGTGAACAG
GGAACATTCCCAGCCAGGGCCTTATAGGATCCCTCAGGACAGGCTAAAGA
GGCAAAGAGGAGAATAAGGGGTCATGTTTACTTCATCCACTCACTCTGAG
TTTCTAGACATCTGTATAAGGTGTCCTTTGTTCCCCAGAGATGGTTCTTT
GTCCTGAGAGCCAATCTCTACCTCCTGTTTTGGGCTGCATAGATCTATTT
AGTCAGCCCGGGGATAGAATTCATTTCCACTTATGTTGGAAATGTGTGTG
GCGCTTGTGCTGGGTGTGCTGGGGGCTGTAGGCAGGGCAAGTTCAGGAGT
AGGTGTTACTGGCCAGGATACATAAACTCTCTGTGGTCTTGTTAGCCAAT
CTGCTGCTATTGCCTGCCTGCCTCACAGCCACCAGCCTACAGTGAATCGT
TCCCAGCTGGGTGGATTATG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no164_d01.g1 MSMg01no164_d01.g1 CHROMAT_FILE:
MSMg01no164_d01.g1 PHD_FILE: MSMg01no164_d01.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:31:58 2005
         (626 letters)



>mm_chr6_41564924_41565949
          Length = 1026

 Score = 1149 bits (594), Expect = 0.0
 Identities = 618/626 (98%)
 Strand = Plus / Minus

                                                                       
Query: 1   aagtcactcaagtgaactccaaagacctttcacttccagtgttgttaggccccctaaatc 60
           ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 826 aagtcactcaagtgaactccaaagacctttcacttccagtgttgttaggtcccctaaatc 767

                                                                       
Query: 61  ctcacccattccctgatttaatgtgttgagctgaactgagactcaccagtgcagggagcc 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 766 ctcacccattccctgatttaatgtgttgagctgaactgagactcaccagtgcagggagcc 707

                                                                       
Query: 121 tctggtgggtccgaactggccctgtagaagccttggagacatgggcaaactggggctgca 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 706 tctggtgggtccgaactggccctgtagaagccttggagacatgggcaaactggggctgca 647

                                                                       
Query: 181 gggtcaggggagtggctgcgggctggacacggtgaacagggaacattcccagccagggcc 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 646 gggtcaggggagtggctgcgggctggacacggtgaacagggaacattcccagccagggcc 587

                                                                       
Query: 241 ttataggatccctcaggacaggctaaagaggcaaagaggagaataaggggtcatgtttac 300
           ||||||||||||||||| |||||||||||||||||| |||||||||||||||||||||||
Sbjct: 586 ttataggatccctcagggcaggctaaagaggcaaaggggagaataaggggtcatgtttac 527

                                                                       
Query: 301 ttcatccactcactctgagtttctagacatctgtataaggtgtcctttgttccccagaga 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 526 ttcatccactcactctgagtttctagacatctgtataaggtgtcctttgttccccagaga 467

                                                                       
Query: 361 tggttctttgtcctgagagccaatctctacctcctgttttgggctgcatagatctattta 420
           |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 466 tggttctttgtcctgagagccagtctctacctcctgttttgggctgcatagatctattta 407

                                                                       
Query: 421 gtcagcccggggatagaattcatttccacttatgttggaaatgtgtgtggcgcttgtgct 480
           ||||| |||||||||||||||||||||||||||||||||||||||||||| | |||||||
Sbjct: 406 gtcagtccggggatagaattcatttccacttatgttggaaatgtgtgtgggggttgtgct 347

                                                                       
Query: 481 gggtgtgctgggggctgtaggcagggcaagttcaggagtaggtgttactggccaggatac 540
           |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 346 gggtgtgctgggggctgtgggcagggcaagttcaggagtaggtgttactggccaggatac 287

                                                                       
Query: 541 ataaactctctgtggtcttgttagccaatctgctgctattgcctgcctgcctcacagcca 600
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 286 ataaactctctgtggtcttgttagccaatctgctgctattgcctgcctgcctcacagcca 227

                                     
Query: 601 ccagcctacagtgaatcgttcccagc 626
           ||||||||||||||||||||||||||
Sbjct: 226 ccagcctacagtgaatcgttcccagc 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 27
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 626
Length of database: 1026
Length adjustment: 10
Effective length of query: 616
Effective length of database: 1016
Effective search space:   625856
Effective search space used:   625856
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)