XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTC
TCTGTGGGAATAATCCACAAAGTCTCAGAGAAAGAGAAGGATACTTTGAA
TATGGTTTGATATATGAGTTTGACTGTAGAAGTACCCATTTTACTTATTG
TCTAAAAGAGCCATAGACATAGATGTATATCTTTCTGTTGTCTCTTTTGC
TCATAGCACCAAAATCTCAACCAAGAAGGACTTTATAGGTTTAGTTTAAA
ACAAAGAGGCCAGAGCCAGAAACTTCTATTTAGAGTTTATTTATGAGTCT
CAATAATAGTAGATGGACAGACATGGGTATCGATTGTCCTTATAAAGGAC
AATATTTATTTGTGGCTGGCCCACCCGCTCAAAGGTTCAGTCCATTATCA
TCAAGGTGGGCACATGGCAGCATCCAGGCATACATGATGCAGGAGGAGTT
GAGAGCTTCTCATCTTCATCTGAAGGCTGCTAGTAGAATACTACAGGCTT
CCAGGCAGCTAGGATAAGTGTAGCGGCCACCAGCCTCAGCCTTGAGTATG
CTGGCTTTGACCTTGCTGCCACTGAGTGTGAGACTACCTGGTGTGGAGCC
TTCCTCTTTATATGGTTCTATATGTTTGTTACCTGCCAATAGGCCTTTGA
AAAATTTTATATTAAGCAATTTACATTTCCCTTAAAGTTGTTTTCGGTCT
CCAAAAAGATATTGAGTAAAAATATATTCTCCCCTTTTTTAATTTATAN

TXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXTTCTCTAGAAAGTAGGAAGGAGACAGACTCG
TAAGCAGAAAATAGGTGATAGATCTCACAACAGGTGTGTATATCATCACT
GAGGCAGAAGTTGGAATGATTAACTGTCCAGGGAAATCTTTATGATACTG
CAATGGAGGGACCAGAAGAACAGAGGGAAGTTACAGACAGGGAAAGAAGG
AGACATTTAGGTAATATTTATCCTGTTTGCAATAGGAAAGGGGGCTAATA
TACAATTTGTGACAAGATGTGACATACAGAGTTTCCAAGTGGAGTAGAAC
TAGGTTGTTTTTTTATAACCACCCACCGCCCAATTATCCTACTTTAAGGG
ACAGAAATTGAAAACACCCGCTGTGATATGAAAATATAAACTGGTCCAGC
CATTATGGAAGCAGGCATGAAACTTCTACATTTGTTTCCACCTTGAGAAC
AGATTAAATACTATGAGGTTTCCTCATAACCTAAAAATATGCGCAACCTA
TCATATAACTCAACTCTAAGCTAACATGTCCCAGAGATACTTACACCTAA
TAGCCCTTTTAATAGTAACCTAAATCATATTACCAACCTATATATCCATC
AATAGAAGAATGTATGAGGAAAATATGGATTATATGCCATAATAATATAA
ATATTTTGCCCCTCAAATAAGTGAAACTTCTTCCTTGGTATAAAAACTCA
TGCCATCCN

Query= MSMg01no164_k07.b1 MSMg01no164_k07.b1 CHROMAT_FILE:
MSMg01no164_k07.b1 PHD_FILE: MSMg01no164_k07.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:32:33 2005
         (324 letters)



>mm_chr6_15665703_15666426
          Length = 724

 Score =  600 bits (310), Expect = e-176
 Identities = 316/318 (99%)
 Strand = Plus / Minus

                                                                       
Query: 5   gaattctctgtgggaataatccacaaagtctcagagaaagagaaggatactttgaatatg 64
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 522 gaattctctgtgggaataatccacaaagtctcagagaaagagaaggatactttgaatatg 463

                                                                       
Query: 65  gtttgatatatgagtttgactgtagaagtacccattttacttattgtctaaaagagccat 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 462 gtttgatatatgagtttgactgtagaagtacccattttacttattgtctaaaagagccat 403

                                                                       
Query: 125 agacatagatgtatatctttctgttgtctcttttgctcatagcaccaaaatctcaaccaa 184
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 402 agacatagatgtatatctttctgttgtctcttttgctcatagcaccaaaatctcaaacaa 343

                                                                       
Query: 185 gaaggactttataggtttagtttaaaacaaagaggccagagccagaaacttctatttaga 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 342 gaaggactttataggtttagtttaaaacaaagaggccagagccagaaacttctatttaga 283

                                                                       
Query: 245 gtttatttatgagtctcaataatagtagatggacagacatgggtatcgattgtccttata 304
           ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 282 gtttatttatgagtctcaataatagtagatggatagacatgggtatcgattgtccttata 223

                             
Query: 305 aaggacaatatttatttg 322
           ||||||||||||||||||
Sbjct: 222 aaggacaatatttatttg 205


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 18
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 324
Length of database: 724
Length adjustment: 9
Effective length of query: 315
Effective length of database: 715
Effective search space:   225225
Effective search space used:   225225
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no164_k07.g1 MSMg01no164_k07.g1 CHROMAT_FILE:
MSMg01no164_k07.g1 PHD_FILE: MSMg01no164_k07.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:32:33 2005
         (297 letters)



>mm_chr6_15520432_15521128
          Length = 697

 Score =  540 bits (279), Expect = e-158
 Identities = 288/291 (98%)
 Strand = Plus / Plus

                                                                       
Query: 1   ttctctagaaagtaggaaggagacagactcgtaagcagaaaataggtgatagatctcaca 60
           ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 201 ttctctagaaagtaggaaggagacagactcgtaggcagaaaataggtgatagatctcaca 260

                                                                       
Query: 61  acaggtgtgtatatcatcactgaggcagaagttggaatgattaactgtccagggaaatct 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 261 acaggtgtgtatatcatcactgaggcagaagttggaatgattaactgtccagggaaacct 320

                                                                       
Query: 121 ttatgatactgcaatggagggaccagaagaacagagggaagttacagacagggaaagaag 180
           ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 321 ttatgatactgcaatggagggaccagaagaacacagggaagttacagacagggaaagaag 380

                                                                       
Query: 181 gagacatttaggtaatatttatcctgtttgcaataggaaagggggctaatatacaatttg 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 gagacatttaggtaatatttatcctgtttgcaataggaaagggggctaatatacaatttg 440

                                                              
Query: 241 tgacaagatgtgacatacagagtttccaagtggagtagaactaggttgttt 291
           |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 tgacaagatgtgacatacagagtttccaagtggagtagaactaggttgttt 491


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 297
Length of database: 697
Length adjustment: 9
Effective length of query: 288
Effective length of database: 688
Effective search space:   198144
Effective search space used:   198144
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)