BAC Information

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BAC

Clone NameMSMg01-165B10
Chromosome6 (Build37)
Map Location 23,377,164 - 23,377,367
singlet/doubletsinglet
Overlap geneCadps2
Upstream geneLOC100040959, LOC668018, LOC668022, Ptprz1, Aass, EG668044, EG546894, EG668053, EG384356, Fezf1
Downstream geneRnf133, Rnf148, Tas2r118, LOC100041082, Slc13a1, LOC100041094
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-165B10.T7 (MSMg01no165_b10.b1)MSMg01-165B10.TJ (MSMg01no165_b10.g1)
ACCAG363355AG363356
length715717
length of high quality
(start - end)		674 (42 - 715)643 (73 - 715)
definitionCHROMAT_FILE: MSMg01no165_b10.b1 PHD_FILE: MSMg01no165_b10.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:33:07 2005CHROMAT_FILE: MSMg01no165_b10.g1 PHD_FILE: MSMg01no165_b10.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:33:07 2005
singlet/doublet---singlet
BLAST hitno hit dataplural
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATT
CTTGCTTCTCTTCCAGAGAACCCGGGTTTGATTCCCAGCACCTGGCAGTT
CCCAACTGTCTGTAATTCCAGTTTCAAATGTTCTAACACCCTCTTGTGGC
CTCCAGAGGCACCTGCACACTTGTGATTCAGGCAAAATGTTCATACAAAT
CCAATAAATAAATCTTTTAAAAAAACAAAAATCTGGGCTGGAGAGATGGC
TCAGTGGTTAAGAGCACCGACTGCTCTTCTGAAGGACCTGAGTCAAATCC
CAGCAACCACATGGTGGCTCACAACCATCCGTAATGAGATCTGACGCCCT
CTTCTAGTGCATCTGAAGACAACTACAGTGTACTTAGATATAATAATAAA
TAAATGTTTTTTAAAAATCGAGGGATGGAGAGATGACTCAGCAGTTAAAA
GGACTGACTGCTCTTCCAGAGGTGCTGAGTTCAATTCCCAGCAACAACAT
GGTGGCTCATAACCATCTGTAATAGAATCTGATGCTCTCTTCTGGTGTTT
CTGATAGGAGCCTGAGATGGCTCTGAGGTTAAAAAATAAAAAACAAAGCA
AACAAACAAAAATTCTCTGGGCAGTGGTGGCGCATGCCTTTAATCCCAAC
ACTTGGGAGGCAGAGGCAGGAGGATTTCTGAGTTCGAGGCCAGCCTGGTC
TACAGAGTGAGCTCN

TGCTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXTCCAGAGACAGACTTTGGATCACAGACT
GAATGATTCGTATTCTTGTTTGGGGTGGTTTAGCCCTGGCCAAGTCTTTG
TGTTAGATGAGTACTGTGCCCGCTACGGAGTGAGAGGCTGTCACAGGCAT
CTCTGCTACCTTACAGAACTGATGGAACATTCAGAAAACGGTGCTGTCAT
TGACCCCACCCTGCTCCATTACAGCTTTGCATTCTGTGCCTCTCACGTGC
ACGGCAACAGGTTAGCCAGTACACCTTTGCTATGTGCAGCTATAGAGAAA
AAAAGTCGGAACCACAGGAATTAATGCAACTGGAAGGATACACAGTGGAT
TACACAGACCCTCACCCAGGCCTTCAGGGTGGTCAGGTGTTCTTCAATCT
TCAAGAGGGAGATACTGTGATCTTTGCCAGTGATGATGAACAGGACAGAA
TATTATGGGTACAAGCCATGTACAGGGCTACAGGCCAGTCTTACAAACCA
GTTCCTGCAGTCCAAAGCCAGAAGCTGAATCCTAAAGGCGGAGCTCTCCA
TGCAGATGCTCAGCTTTATGCAGACCGTTTTCAGAAACACGGGATGGATG
AGTTTATTTCTGCGAGTCCTTGCAAGCTTGACCATGCCTTCCTCTTCAGT
ATTTTCCTAGCAGACCN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no165_b10.g1 MSMg01no165_b10.g1 CHROMAT_FILE:
MSMg01no165_b10.g1 PHD_FILE: MSMg01no165_b10.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:33:07 2005
         (643 letters)



>mm_chr6_23376620_23377665
          Length = 1046

 Score =  364 bits (188), Expect = e-104
 Identities = 199/204 (97%), Gaps = 3/204 (1%)
 Strand = Plus / Minus

                                                                       
Query: 345 caggccttcagggtggtcaggtgttcttcaa---tcttcaagagggagatactgtgatct 401
           |||||||||||||||||||||||||||||||   | || |||||||||||||||||||||
Sbjct: 748 caggccttcagggtggtcaggtgttcttcaacgctgttaaagagggagatactgtgatct 689

                                                                       
Query: 402 ttgccagtgatgatgaacaggacagaatattatgggtacaagccatgtacagggctacag 461
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 688 ttgccagtgatgatgaacaggacagaatattatgggtacaagccatgtacagggctacag 629

                                                                       
Query: 462 gccagtcttacaaaccagttcctgcagtccaaagccagaagctgaatcctaaaggcggag 521
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 628 gccagtcttacaaaccagttcctgcagtccaaagccagaagctgaatcctaaaggcggag 569

                                   
Query: 522 ctctccatgcagatgctcagcttt 545
           ||||||||||||||||||||||||
Sbjct: 568 ctctccatgcagatgctcagcttt 545


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 11
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 643
Length of database: 1046
Length adjustment: 10
Effective length of query: 633
Effective length of database: 1036
Effective search space:   655788
Effective search space used:   655788
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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