XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGCCGCGGAATTCTGT
TCGTTGCGCTCTTCTCCAGTGTTAGACTCACATGATTCCCTTATTGTTTG
TCTTGGTCACTTTGATCAGTCACCCACAGGTGTGTCCTATCATGGGATAA
TCTATCAGATGCCATGGACTCTATAGAGACAAGAGAGGAAGACGGCTGGG
AACCAGCTTCTCCATACAGCTCTTCCCCATGATCCCTGTGAGCAGAGGCT
TGCGGGGGCTTTGTTTCAAATTAGCTTTTCAGAAATGTCATACAGCCTAA
AAGTGAATGCAGGTTGTGCCTCTTTTAGGGCAGTTCAAAGACTTGCTTAT
CTGACGCTGTTTAAAATTGGAGGCAGAGGCAGGCAGATTTCTGAGTTCGA
GGCCAGCCTGGCCTACAGAGTGAGTTCCAGGACAGAGAAACCCTGTCTCA
AAAAAACAAAAACAAAAACAAAACTAAACTAAACTAAAAAAATCGGAGTT
TCCTAAGGCCACAACCCTAGTAAACTTCCTCTATTTGAAATCTGTATTCT
CCTAGCAGTTCCCTGAATTTGAACTTCCTTTTTCAGCCATCTCTTAATTC
TAGCCTTAATTTTAAACTGTTCAAAGCCATAAACTTCTGTTTCATTCCTG
TTTAATAGTATCTTCGTATATTTTCTATTTTACTATAAGGAGAGAANACA
GAGAGGCAACCCCTGAGGCTGGGTTT

XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXAACAAGGCAGGAATCTGGAGGCAGGAGCTGAT
GCAGAGGCCATAGAGGTGCTGCTTACTGGATTTCTCATTACTGCTTGCTC
AATCTGCTTTCTTATAGAACCTAGAACCACCAATCCATGAATGGCACTAC
CCACAATGGCCTGGGTCCTTCTCCATCAATCACTAACTAAGAAAATATTC
AACAGTTCGATCATATGGAAACATTTTCTCAACTGAGGTTCCCTCCTTTC
CAATGACTCCAGCTTGCAGCAAGTTGACATTAAACTATCTAGCATGCCCC
TTAACATCCAAAAGACAAATAAACCTGTTTAAATGTGGACAGGTATCTGA
ATAGATATTTCTCTTATGAAAGTATACAAATGCCAATTAAGGTGTTAAGA
GACATTTGACAATTTCAGCAACCTGTGAAAATGCAGATGAAGTAAAAATC
AGTCACTTCTTCATATATTCAAGGATGAGAATAATAGAAGGGACATGAGG
CTAGGTACAGGGCAATGGGTCACCATACCTACCCATTATTCTTGAAACTC
CAATATTGAGAGTGGAGACCAGTGGATCCTCAGAGTTCACCAACCATCCA
GTTAAGACCCTACCCCCCCCCAAAATAATCAGTGAGTTTCCAGGTCAGTG
AGAGACCTTGTCTCAAGGCAGTAAGGC

Query= MSMg01no165_n06.b1 MSMg01no165_n06.b1 CHROMAT_FILE:
MSMg01no165_n06.b1 PHD_FILE: MSMg01no165_n06.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:34:08 2005
         (690 letters)



>mm_chr6_5042285_5043374
          Length = 1090

 Score = 1280 bits (662), Expect = 0.0
 Identities = 679/685 (99%)
 Strand = Plus / Plus

                                                                       
Query: 6   gaattctgttcgttgcgctcttctccagtgttagactcacatgattcccttattgtttgt 65
           ||||||||||||  | ||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 206 gaattctgttcgcagtgctcttctccagtgttagactcacaggattcccttattgtttgt 265

                                                                       
Query: 66  cttggtcactttgatcagtcacccacaggtgtgtcctatcatgggataatctatcagatg 125
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 266 cttggtcactttgatcagtcacccacaggtgtgtcctatcatgggataatctatcagatg 325

                                                                       
Query: 126 ccatggactctatagagacaagagaggaagacggctgggaaccagcttctccatacagct 185
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 326 ccatggactctatagagacaagagaggaagacggctgggaaccagcttctccatacagct 385

                                                                       
Query: 186 cttccccatgatccctgtgagcagaggcttgcgggggctttgtttcaaattagcttttca 245
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 386 cttccccatgatccctgtgagcagaggcttgcgggggctttgtttcaaattagcttttca 445

                                                                       
Query: 246 gaaatgtcatacagcctaaaagtgaatgcaggttgtgcctcttttagggcagttcaaaga 305
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 446 gaaatgtcatacagcctaaaagtgaatgcaggttgtgcctcttttagggcagttcaaaga 505

                                                                       
Query: 306 cttgcttatctgacgctgtttaaaattggaggcagaggcaggcagatttctgagttcgag 365
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 506 cttgcttatctgacgctgtttaaaattggaggcagaggcaggcagatttctgagttcgag 565

                                                                       
Query: 366 gccagcctggcctacagagtgagttccaggacagagaaaccctgtctcaaaaaaacaaaa 425
           |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 566 gccagcctggtctacagagtgagttccaggacagagaaaccctgtctcaaaaaaacaaaa 625

                                                                       
Query: 426 acaaaaacaaaactaaactaaactaaaaaaatcggagtttcctaaggccacaaccctagt 485
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 626 acaaaaacaaaactaaactaaactaaaaaaatcggagtttcctaaggccacaaccctagt 685

                                                                       
Query: 486 aaacttcctctatttgaaatctgtattctcctagcagttccctgaatttgaacttccttt 545
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 686 aaacttcctctatttgaaatctgtattctcctagcagttccctgaatttgaacttccttt 745

                                                                       
Query: 546 ttcagccatctcttaattctagccttaattttaaactgttcaaagccataaacttctgtt 605
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 746 ttcagccatctcttaattctagccttaattttaaactgttcaaagccataaacttctgtt 805

                                                                       
Query: 606 tcattcctgtttaatagtatcttcgtatattttctattttactataaggagagaanacag 665
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 806 tcattcctgtttaatagtatcttcgtatattttctattttactataaggagagaaaacag 865

                                    
Query: 666 agaggcaacccctgaggctgggttt 690
           |||||||||||||||||||||||||
Sbjct: 866 agaggcaacccctgaggctgggttt 890


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 33
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 690
Length of database: 1090
Length adjustment: 10
Effective length of query: 680
Effective length of database: 1080
Effective search space:   734400
Effective search space used:   734400
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)