Query= MSMg01no165_n20.b1 MSMg01no165_n20.b1 CHROMAT_FILE:
MSMg01no165_n20.b1 PHD_FILE: MSMg01no165_n20.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:34:11 2005
(696 letters)
>mm_chr6_21979381_21980477
Length = 1097
Score = 1174 bits (607), Expect = 0.0
Identities = 673/695 (96%), Gaps = 5/695 (0%)
Strand = Plus / Minus
Query: 5 gaattctctgttcc-tgcctattttgttacataaatgataagattcatatatgcctttca 63
|||||||||||||| | ||||||||||||||||||||||| |||||||||||||||||
Sbjct: 897 gaattctctgttccaaggatattttgttacataaatgataaggttcatatatgcctttca 838
Query: 64 cattttttcccttcaagaaagaagtgaaagttgttgtggttgttaaaatgttactatcaa 123
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 837 cattttttcctttcaagaaagaagtgaaagttgttgtggttgttaaaatgttactatcaa 778
Query: 124 cgttttagtagacttttgtttcttagaaaacagaagggaacttatgtcgaggttccagag 183
||||||||||||||||||||||||| |||||||||||||| || ||||||||||||||||
Sbjct: 777 cgttttagtagacttttgtttcttacaaaacagaagggaagttgtgtcgaggttccagag 718
Query: 184 agccctcaccaggtaagaggtgagtccttttcttcagatagtgatgtgtgtatcagccga 243
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 717 agccctcaccaggtaagaggtgagtccttttcttcagatagtgatgtgtgtatcagctga 658
Query: 244 gtattgtgagatgctatgctttggggaataccatataagcgggtaataaaatattgtcag 303
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 657 gtattgtgagatgctatgctttggggaataccatataagcgggtaataaaatattgtcag 598
Query: 304 tttatattgtttatgctacagaagaagagataaggaagacatgtgaaattgttttaaaaa 363
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 597 tttatattgtttatgctacagaagaagagataaggaaaacatgtgaaattgttttaaaaa 538
Query: 364 taacacaaacccttctctaggcaccagagatgtattgaacaagtatgaggaggtctcaga 423
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 537 taacacaaaaccttctctaggcaccagagatgtattgaacaagtatgaggaggtctcaga 478
Query: 424 taatagatttattgtttctaatttaagaaacagttatggggaaaataatgtatttgtaga 483
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 477 taatagatttattgtttctaatttaagaaacagttatggggaaaataatgtatttttaga 418
Query: 484 gcttaagaaattaaaacttgaaatactatgattcgtgtatgattcttatgtcccacaaag 543
| ||||||| ||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 417 gtttaagaagctaaaactggaaatactatgattcgtgtatgattcttatgtcccacaaag 358
Query: 544 gtttgagtattggaatcccagcccctattgtagtggagggaagtggtttgaaatatttat 603
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 357 gtttgagtattggaatctcagcccctattgtagtggagggaagtggtttgaaatatttat 298
Query: 604 taagtgagaccttgtaggaagtcctt-aatacaggtgggagccagcctacagaaaggatg 662
|||||||||||||||||||||||||| ||| |||||||||||||||||||||||||||||
Sbjct: 297 taagtgagaccttgtaggaagtccttaaat-caggtgggagccagcctacagaaaggatg 239
Query: 663 tgggaacaagtctctcactca-cttcttttatgtg 696
|||||||||||||||||| || |||||||||||||
Sbjct: 238 tgggaacaagtctctcac-cagcttcttttatgtg 205
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 29
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 696
Length of database: 1097
Length adjustment: 10
Effective length of query: 686
Effective length of database: 1087
Effective search space: 745682
Effective search space used: 745682
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no165_n20.g1 MSMg01no165_n20.g1 CHROMAT_FILE:
MSMg01no165_n20.g1 PHD_FILE: MSMg01no165_n20.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:34:11 2005
(254 letters)
>mm_chr6_21818913_21819566
Length = 654
Score = 281 bits (145), Expect = 4e-80
Identities = 172/191 (90%), Gaps = 16/191 (8%)
Strand = Plus / Plus
Query: 1 ccatgatgtaatgtacacaggagcctcatttttgtttgtttgtttgtttgtttgtttgtt 60
|||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 217 ccatgatgtaatgtacacaggagcctcattcttgtttgtttgtttgttt----------- 265
Query: 61 tgtttttactgtagatacttgatttgcttgagtggtaagtggatacttagatgagagctt 120
|||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 266 -----ttactgtagatacttgatttgcttgagtggtaagtggatacttagatgagagctt 320
Query: 121 ggttttctcaacgtgactctgtagaaaaagtcataagtagattatattggcttttaaaat 180
| |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 321 gtttttctcaacgtgactctgtagaaaaagtcattagtagattatattggcttttaaaat 380
Query: 181 attcagtttgt 191
|||||||||||
Sbjct: 381 attcagtttgt 391
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 16
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 254
Length of database: 654
Length adjustment: 9
Effective length of query: 245
Effective length of database: 645
Effective search space: 158025
Effective search space used: 158025
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
|
