Query= MSMg01no166_l24.b1 MSMg01no166_l24.b1 CHROMAT_FILE:
MSMg01no166_l24.b1 PHD_FILE: MSMg01no166_l24.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:35:21 2005
(381 letters)
>mm_chr6_14335169_14335952
Length = 784
Score = 563 bits (291), Expect = e-165
Identities = 352/379 (92%), Gaps = 16/379 (4%)
Strand = Plus / Minus
Query: 17 gaattcacacacacagagcccggcatacacacacatacatgtgaatacacacagagcaag 76
||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 625 gaattcacacacacagagcaaggcatacacacacatacatgtgaatacacacagagcaag 566
Query: 77 acaaacacaaatgcaaatagacacacacatacataacaaatcacacagagagaaaacatt 136
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 565 acaaacaaaaatgcaaatagacacacacatacataacaaatcacacagagagaaaacatt 506
Query: 137 catgcataactatgt---gggggggcaagtctcattcatcttagagttctgggggttata 193
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 505 catgcataactatgtggggggggggcaagtctcattcatcttagagttctgggggttata 446
Query: 194 acagtaattttggttgtctttatgggtccccccttcagctt-aaatcattgatcctagaa 252
||||||||||||||||||||||||||||||||||| ||||| || | |||||| ||||||
Sbjct: 445 acagtaattttggttgtctttatgggtcccccctttagcttgaact-attgattctagaa 387
Query: 253 aaaaaggact-cagagcctataactttaggtaaacaagtataggcctgaccatgaacatt 311
|||||||| | |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 386 aaaaagga-tgcagagcctataactttaggtaaacaagtataggcctgaccatgaacatt 328
Query: 312 t---------ctgggccaattagctaagaagccctgctggcgagagactaagcctgcttg 362
| |||||||||||||||||| ||| ||||||| | |||||||||| ||||||
Sbjct: 327 tctgacaagactgggccaattagctaaggagcgctgctggtgggagactaagcttgcttg 268
Query: 363 gcctttgtctcaggtcaga 381
|||||||||||||||||||
Sbjct: 267 gcctttgtctcaggtcaga 249
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 27
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 381
Length of database: 784
Length adjustment: 9
Effective length of query: 372
Effective length of database: 775
Effective search space: 288300
Effective search space used: 288300
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no166_l24.g1 MSMg01no166_l24.g1 CHROMAT_FILE:
MSMg01no166_l24.g1 PHD_FILE: MSMg01no166_l24.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:35:21 2005
(623 letters)
>mm_chr6_14166606_14167626
Length = 1021
Score = 1170 bits (605), Expect = 0.0
Identities = 618/623 (99%), Gaps = 2/623 (0%)
Strand = Plus / Plus
Query: 1 atggcaatacacaaattatggcttttatgttcctagtgacattattagatatactctaga 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 atggcaatacacaaattatggcttttatgttcctagtgacattattagatatactctaga 260
Query: 61 ctagtagatttgtgacattgaggtgttatgttacttataaaaagaataatgcatttgttc 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 ctagtagatttgtgacattgaggtgttatgttacttataaaaagaataatgcatttgttc 320
Query: 121 agagagtagaacggtattaatccattcaaacttctgctttgagccatactacagattcca 180
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 agagagtagaacggcattaatccattcaaacttctgctttgagccatactacagattcca 380
Query: 181 tcactgattctaattatgcctcttaaaattagaatgtttatatatttatgtatgactttt 240
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 381 tcactgattctaattatgcctcttacaattagaatgtttatatatttatgtatgactttt 440
Query: 241 atacaaaagcagatcttgtagcgacgataatattttaaaaagataccaaatggcaagtaa 300
| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 a--caaaagcagatcttgtagcgacgataatattttaaaaagataccaaatggcaagtaa 498
Query: 301 caaagaaaaatttagaaagtaaaataatgaattattccaaatgtaaggaaaactattatt 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 499 caaagaaaaatttagaaagtaaaataatgaattattccaaatgtaaggaaaactattatt 558
Query: 361 ttcttaaaagtagaaaattaaattagcatgaacatgtacccttaaaaagctattctcatt 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 559 ttcttaaaagtagaaaattaaattagcatgaacatgtacccttaaaaagctattctcatt 618
Query: 421 gtaagactttaagtctatattaagcattgttttgagtttcctggattattcattttctaa 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 619 gtaagactttaagtctatattaagcattgttttgagtttcctggattattcattttctaa 678
Query: 481 gatagatggacaatgcttggcaattagagaagagaatcacagcaatttacatagattaga 540
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 679 gatagatggacaatgcttggcaattagagaagagaatcacagcaatttacatagattaga 738
Query: 541 aagtttgcagtctcttatgtccagagacaatgatgtgatgatcatatagttaattgaaac 600
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 739 aagtttgcagtctcttatgtccagagacaatgatgtgatgatcatatagttaaatgaaac 798
Query: 601 taaaaattcacactttatggatt 623
|||||||||||||||||||||||
Sbjct: 799 taaaaattcacactttatggatt 821
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 28
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 623
Length of database: 1021
Length adjustment: 10
Effective length of query: 613
Effective length of database: 1011
Effective search space: 619743
Effective search space used: 619743
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
