Query= MSMg01no167_b18.b1 MSMg01no167_b18.b1 CHROMAT_FILE:
MSMg01no167_b18.b1 PHD_FILE: MSMg01no167_b18.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:35:48 2005
(668 letters)
>mm_chr6_12397662_12398726
Length = 1065
Score = 1222 bits (632), Expect = 0.0
Identities = 655/664 (98%), Gaps = 3/664 (0%)
Strand = Plus / Minus
Query: 5 gaattctgcaattaacctccctttgtattgaccactaaaaagctgagagttaagattttt 64
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 865 gaattctgcaattaatctccctttgtattgaccactaaaaagctgagagttaagattttt 806
Query: 65 gaagtgcttgtaacccaatgaaagcctcaagattccatttaaagaaataattcctctgtc 124
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 805 gaagtgcttgtaacccaatgaaagcctcaagattccatttaaagaaataattcctctgtc 746
Query: 125 tctactttcaaaacataaattcatcgcttgcctctttttaattactaccagctagtgcat 184
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 745 tctactttcaaaacataaattcatcgcttgcctctttttaattactaccagctagtgcat 686
Query: 185 atattgtcatattaaaatatgtttttgagaaaccaggtaacctgtgaattaatgaatgca 244
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 685 atattgtcatattaaaatatatttttgagaaaccaggtaacctgtgaattaatgaatgca 626
Query: 245 catatatgtatctgcctaatgcattttgagttgaaggaaaagtcataatgggaacaatat 304
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 625 catatatgtatctgcctaatgcattttgagttgaaggaaaagtcataatgggaacaatat 566
Query: 305 gctattaaacaaacattcaaaatgagaatgaaaacaacaaaacactgttatgcacacttt 364
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 565 gctattaaacaaacattcaaaatgagaatgaaaacaacaaaacactgttatgcacacttt 506
Query: 365 tggactcagtgtctctagaaatttctgtcttagaagtcctgctgtccaggatgaactttt 424
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 505 tggactcagtgtctctagaaatttctgtcttagaagtcctgctgtccaggatgaactttt 446
Query: 425 gaaacttttgtgtttgcgtatgattctttgagaacatgaggctgtgtggatgttacagcc 484
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 gaaacttttgtgtttgcgtatgattctttgagaacatgaggctgtgtggatgttacagcc 386
Query: 485 atgtgtaactcttggaggatctaagagaatagaagatgacttgagggattatttatagga 544
|||||||||||||||||||||||||||||| |||||||||||||| ||||||||||||
Sbjct: 385 atgtgtaactcttggaggatctaagagaat---agatgacttgaggggttatttatagga 329
Query: 545 aatcagaaaggccagctcaggctgaggactcttctccaatagtctttgattatgcttgtg 604
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 328 aatcagaaaggccagctcaggctgaggactcttctccaatagtcttcgattatgcttgtg 269
Query: 605 gttagatacattcagcagtatgaaaaatctaaacatgtagtaacttcttgtgtcctctgt 664
|||||||||||||||||| |||||||||||||||||||||||||||||| ||||||||||
Sbjct: 268 gttagatacattcagcagaatgaaaaatctaaacatgtagtaacttcttctgtcctctgt 209
Query: 665 acca 668
||||
Sbjct: 208 acca 205
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 31
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 668
Length of database: 1065
Length adjustment: 10
Effective length of query: 658
Effective length of database: 1055
Effective search space: 694190
Effective search space used: 694190
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no167_b18.g1 MSMg01no167_b18.g1 CHROMAT_FILE:
MSMg01no167_b18.g1 PHD_FILE: MSMg01no167_b18.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:35:48 2005
(549 letters)
>mm_chr6_12285003_12285951
Length = 949
Score = 1011 bits (523), Expect = 0.0
Identities = 542/549 (98%), Gaps = 2/549 (0%)
Strand = Plus / Plus
Query: 1 atctttcttaaaagaaatgtgggtcctcaggcgatataaatgtttttatataatttgctt 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 atctttcttaaaagaaatgtgggtcctcaggcgatataaatgtttttatataatttgctt 260
Query: 61 atgaagaatttctattctcaggtttatctcatcaactctgctgtaacttatttatttatt 120
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 261 atgaagaatttctattctcaggtttatctcattaactctgctgtaacttatttatttatt 320
Query: 121 tattatttatttatgtgtatggcctctcataatgtatcattttatttgtattttgatcct 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 tattatttatttatgtgtatggcctctcataatgtatcattttatttgtattttgatcct 380
Query: 181 gtcattgtgatttacatgttacagttttgaagtatatataagaaagaatttcaagttcac 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 gtcattgtgatttacatgttacagttttgaagtatatataagaaagaatttcaagttcac 440
Query: 241 aggtgatatatttcattccaacatctaaagtgaaatcaaaggtatgaggaagcattaaaa 300
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 aggtgatatattccattccaacatctaaagtgaaatcaaaggtatgaggaagcattaaaa 500
Query: 301 taaaaagtattaatattatagcagagaataacaatttttattggtaattctcagaactgc 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 --aaaagtattaatattatagcagagaataacaatttttattggtaattctcagaactgc 558
Query: 361 cattcctttttgctttctatgaaaaagtaatttaaatttttagtatctgtacaatatgta 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 559 cattcctttttgctttctatgaaaaagtaatttaaatttttagtatctgtacaatatgta 618
Query: 421 aatgtgctgttatgagaatggatatagactatgaaattagacaagagaccatgggaagga 480
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 619 aatgtgctgttatgagaatggatatagactatgaaattagacgagagaccatgggaagga 678
Query: 481 aacaaggtatattgaggaaggagagtgatgggaatgttagtggatttaaccctaattttc 540
|||| ||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 679 aacacggtatattgaggaaggagagtgacgggaatgttagtggatttaaccctaattttc 738
Query: 541 ctctttgta 549
|||||||||
Sbjct: 739 ctctttgta 747
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 35
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 549
Length of database: 949
Length adjustment: 10
Effective length of query: 539
Effective length of database: 939
Effective search space: 506121
Effective search space used: 506121
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
