BAC Information

Click to search

BAC

Clone NameMSMg01-167M01
Chromosome6 (Build37)
Map Location 39,897,807 - 40,055,163
singlet/doubletdoublet
Overlap genenone
Upstream geneTbxas1, 1700025N23Rik, Parp12, 4930599N23Rik, A630082K20Rik, Slc37a3, Rab19, Mkrn1, ENSMUSG00000068601, Dennd2a, Adck2, Ndufb2, Braf, Fth-ps2, Mrps33, LOC665247, LOC665254
Downstream geneEG434008, Agk, E330009J07Rik, BC052883, Ssbp1, Tas2r137, Tas2r108, 1700016G05Rik, LOC669661, Olfr461, Olfr460, Clec5a, Tas2r138, Mgam, EG638904, Moxd2, LOC621968, BC048599, 1700074P13Rik, LOC194360, 1810009J06Rik, LOC100040208, 2210010C04Rik, LOC100039790
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-167M01.T7 (MSMg01no167_m01.b1)MSMg01-167M01.TJ (MSMg01no167_m01.g1)
ACCAG365140AG365141
length703730
length of high quality
(start - end)
546 (43 - 588)542 (77 - 618)
definitionCHROMAT_FILE: MSMg01no167_m01.b1 PHD_FILE: MSMg01no167_m01.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:36:36 2005CHROMAT_FILE: MSMg01no167_m01.g1 PHD_FILE: MSMg01no167_m01.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:36:36 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(40,054,833 - 40,055,163)(39,897,807 - 39,898,348)
sequence
CTACCTATTCGAAGAGAGACCGCGGAATTCATAGCCTTTCTGCCTTGAGA
TCTCCATACCAAGATCCAGGTCAGAAACTTCTATCTCCCAGCCTCCAGAT
TAGGATCACTGGTGAGCCTTCCAATTCTGGATTGTATTTCATTCCAAATA
TAGTCAAGTTGACAACCAGGAATAGCCACTACAATGTCCAACACCAAGAG
TGAGCCACATTGTAAACGCTGAAGTTTGAGTGCTAAGTAGATGCCAATGA
CACATTTTAGCAAACGTACTTCTGAGGTAAGGCATGTTAGTAGTATTGGA
GGCACAGGGGATATACAGGAGCCCTATACATTTTCTATTCAGTTTTGCTG
TGAACCTAATACTTCTCTAAAAAAGAAAATAATAATAAGGTTCGTGGCCT
GAGGAGCTGAGTCAGTAGGTAAAGTGCTTGCTGCACACAGGACCAAGTTA
ATCTCTAAGGTAAAAGCTGGCTATGCCTTTTCCCCAGGAAGCTCTCGGAA
CAGCCATGCAAGGAGCTTTTCACTGTTCCACAGAGTGCCACTGGACAGAG
CTACTTCAGACCTGTAGTCCGTGGGTTTAGTTTGCAAAGGCTGGGTGGTC
AATTCTTTAAGCTTGCATGCCCTAAACATTTCTGTTATCTTCAGTTGACT
ATGCTTTTGAAGTGAGCCATCATCCTTGACTTATTTTAGAATGTATTGTC
TAT
CGATGACXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXCAAGACCCGATGGCTTTACCGGCA
GACCGAGGATCAGGAGGGAGCAACGAAGGCAGCTGAGTTATAGTAGACCA
TGAGGTTGGAGATATCTTTGGGTAGAAATAAGTAGTCAGGAATTCCAAGT
GGAAGAAACCTTTGGTCTCATTAAAGTCAGAAGATTCTACAGGATAAAGA
TAGAAAGCTGTCCATTTGGTCGTGAAGGAGCAGTTCTCTCCCTCAGTAAG
TATTCGTGTAACACCTACTTTGTGCCAAGCACTAATGTGAGAGTGGAGAA
AATGGCAGAGATAAAGGCGAAGTCCTCACTCACATTCTAGTTGGGGAGTA
CAGGCAACAAATTGGGACTAAAAAAATAAAATCCATGCTTGGAATGATTT
GTAAGGCGTCAAATTGGCAAAAGCATGGAAGTAAAAGCATGGAAGACTGA
GAGATGTCTGAAGGGGTGGCATCTGTGCCTGTCTGTATCTGAGTGACAAA
AAGAAGGAGAGGCTACAATTCTGGGGTTGGCAGTCCATGAAATATCTAGG
AAAAGGCTTTCCTTTGGGTGAACCCATGTTGTTGGGGACAGGGAGAATCT
GGGTGTGGCTGTCCTGAGAGTAATAAGGAAGGTATTAGGTAATTGGTGGA
CTTGTCTTACAGATTTCGCTTTATCTTCGT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no167_m01.b1 MSMg01no167_m01.b1 CHROMAT_FILE:
MSMg01no167_m01.b1 PHD_FILE: MSMg01no167_m01.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:36:36 2005
         (546 letters)



>mm_chr6_40054218_40055163
          Length = 946

 Score =  609 bits (315), Expect = e-178
 Identities = 327/331 (98%)
 Strand = Plus / Minus

                                                                       
Query: 212 attttagcaaacgtacttctgaggtaaggcatgttagtagtattggaggcacaggggata 271
           ||||||||||||||||||||||||||||||||||||||||||  ||||||||||||||||
Sbjct: 946 attttagcaaacgtacttctgaggtaaggcatgttagtagtaggggaggcacaggggata 887

                                                                       
Query: 272 tacaggagccctatacattttctattcagttttgctgtgaacctaatacttctctaaaaa 331
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 886 tacaggagccctatacattttctattcagttttgctgtgaacctaatacttctctaaaaa 827

                                                                       
Query: 332 agaaaataataataaggttcgtggcctgaggagctgagtcagtaggtaaagtgcttgctg 391
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 826 agaaaataataataaggttcgtggcctgaggagctgagtcagtaggtaaagtgcttgctg 767

                                                                       
Query: 392 cacacaggaccaagttaatctctaaggtaaaagctggctatgccttttccccaggaagct 451
           |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 766 cacacaggaccaagttcatctctaaggtaaaagctggctatgccttttccccaggaagct 707

                                                                       
Query: 452 ctcggaacagccatgcaaggagcttttcactgttccacagagtgccactggacagagcta 511
           |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 706 ctcggatcagccatgcaaggagcttttcactgttccacagagtgccactggacagagcta 647

                                          
Query: 512 cttcagacctgtagtccgtgggtttagtttg 542
           |||||||||||||||||||||||||||||||
Sbjct: 646 cttcagacctgtagtccgtgggtttagtttg 616


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 546
Length of database: 946
Length adjustment: 10
Effective length of query: 536
Effective length of database: 936
Effective search space:   501696
Effective search space used:   501696
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
Query= MSMg01no167_m01.g1 MSMg01no167_m01.g1 CHROMAT_FILE:
MSMg01no167_m01.g1 PHD_FILE: MSMg01no167_m01.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:36:36 2005
         (542 letters)



>mm_chr6_39897607_39898548
          Length = 942

 Score = 1025 bits (530), Expect = 0.0
 Identities = 539/542 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   caagacccgatggctttaccggcagaccgaggatcaggagggagcaacgaaggcagctga 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 caagacccgatggctttaccggcagaccgaggatcaggagggagcaacgaaggcagctga 260

                                                                       
Query: 61  gttatagtagaccatgaggttggagatatctttgggtagaaataagtagtcaggaattcc 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 gttatagtagaccatgaggttggagatatctttgggtagaaataagtagtcaggaattcc 320

                                                                       
Query: 121 aagtggaagaaacctttggtctcattaaagtcagaagattctacaggataaagatagaaa 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 aagtggaagaaacctttggtctcattaaagtcagaagattctacaggataaagatagaaa 380

                                                                       
Query: 181 gctgtccatttggtcgtgaaggagcagttctctccctcagtaagtattcgtgtaacacct 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 gctgtccatttggtcgtgaaggagcagttctctccctcagtaagtattcgtgtaacacct 440

                                                                       
Query: 241 actttgtgccaagcactaatgtgagagtggagaaaatggcagagataaaggcgaagtcct 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 actttgtgccaagcactaatgtgagagtggagaaaatggcagagataaaggcgaagtcct 500

                                                                       
Query: 301 cactcacattctagttggggagtacaggcaacaaattgggactaaaaaaataaaatccat 360
           ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 501 cactcacattctagttggggagtacaggcaacaaattgggaataaaaaaataaaatccat 560

                                                                       
Query: 361 gcttggaatgatttgtaaggcgtcaaattggcaaaagcatggaagtaaaagcatggaaga 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 gcttggaatgatttgtaaggcgtcaaattggcaaaagcatggaagtaaaagcatggaaga 620

                                                                       
Query: 421 ctgagagatgtctgaaggggtggcatctgtgcctgtctgtatctgagtgacaaaaagaag 480
           |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 ctgagagatgtctgaaggcgtggcatctgtgcctgtctgtatctgagtgacaaaaagaag 680

                                                                       
Query: 481 gagaggctacaattctggggttggcagtccatgaaatatctaggaaaaggctttcctttg 540
           |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 681 gagaggctacaattctggggttggcagtccatgaaatatctaggaagaggctttcctttg 740

             
Query: 541 gg 542
           ||
Sbjct: 741 gg 742


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 30
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 542
Length of database: 942
Length adjustment: 10
Effective length of query: 532
Effective length of database: 932
Effective search space:   495824
Effective search space used:   495824
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)