Query= MSMg01no168_n03.b1 MSMg01no168_n03.b1 CHROMAT_FILE:
MSMg01no168_n03.b1 PHD_FILE: MSMg01no168_n03.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:38:19 2005
(252 letters)
>mm_chr6_110139135_110139786
Length = 652
Score = 472 bits (244), Expect = e-138
Identities = 247/248 (99%)
Strand = Plus / Plus
Query: 5 gaattcaccacatgcaacgaacaagaagtaaacatggtaatataaaatcttttagcatgc 64
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattcaccacatgcaacgaacaagaagtaaacatggtaatataaaatcttttagcatgc 264
Query: 65 atatttaattttctgtgaaccaagtgattcccttaaatgtacaacacatttgctttcaat 124
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 atatttaattttctgtgaaccaagtgattcccttaaatgtacaacacatttgctttcaat 324
Query: 125 acttactacctccatgtaataaagacttctattagtcacattttaaatgtgggaagggtt 184
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 acttacaacctccatgtaataaagacttctattagtcacattttaaatgtgggaagggtt 384
Query: 185 atttaagaagtttatatgaaagaagtaatagtagttaaatctttgattcaagggctggac 244
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 atttaagaagtttatatgaaagaagtaatagtagttaaatctttgattcaagggctggac 444
Query: 245 agatggct 252
||||||||
Sbjct: 445 agatggct 452
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 252
Length of database: 652
Length adjustment: 9
Effective length of query: 243
Effective length of database: 643
Effective search space: 156249
Effective search space used: 156249
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
| Query= MSMg01no168_n03.g1 MSMg01no168_n03.g1 CHROMAT_FILE:
MSMg01no168_n03.g1 PHD_FILE: MSMg01no168_n03.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:38:20 2005
(249 letters)
>mm_chr6_110215741_110216389
Length = 649
Score = 418 bits (216), Expect = e-121
Identities = 240/252 (95%), Gaps = 7/252 (2%)
Strand = Plus / Minus
Query: 1 aaagtgaataagtaaaaaaataaataaaaattaagttaaaaataaataaaaactcatacc 60
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 473 aaagtgaataagtaaaaaaaaaaataaaaattaagttaaaaataaataaaaactcatacc 414
Query: 61 tatttagttaaaaaagaattaagaaaattagattatcttgaaaaaaactaataggaaata 120
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 413 tattaagttaaaaaagaattaagaaaattagattatcttgaaaaaaactaataggaaata 354
Query: 121 agtgaactgaaagataaatcatagaaaaccatttgacatcaagactcaaaaaatgagaaa 180
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 353 agtgaactgaaagaaaaatcatagaaaaccatttgacatcaagactcaaaaaatgagaaa 294
Query: 181 aagaggtaaaagaaatgaatgtatatatacaatttatagacat-------agtttaatta 233
||||||||||||||||||||| ||||||||||||||||||||| ||||||||||
Sbjct: 293 aagaggtaaaagaaatgaatgaatatatacaatttatagacatggtgaaaagtttaatta 234
Query: 234 cgtacaatttca 245
||| ||||||||
Sbjct: 233 cgtgcaatttca 222
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 249
Length of database: 649
Length adjustment: 9
Effective length of query: 240
Effective length of database: 640
Effective search space: 153600
Effective search space used: 153600
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
|
