BAC Information

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BAC

Clone NameMSMg01-169J08
Chromosome6 (Build37)
Map Location 98,361,439 - 98,361,748
singlet/doubletsinglet
Overlap genenone
Upstream geneFrmd4b, LOC641241, LOC100043692, Mitf, Gm765, LOC666019
Downstream geneLOC665963, LOC665979, Foxp1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-169J08.T7 (MSMg01no169_j08.b1)MSMg01-169J08.TJ (MSMg01no169_j08.g1)
ACCAG366412AG366413
length727732
length of high quality
(start - end)
315 (45 - 359)---
definitionCHROMAT_FILE: MSMg01no169_j08.b1 PHD_FILE: MSMg01no169_j08.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:39:18 2005CHROMAT_FILE: MSMg01no169_j08.g1 PHD_FILE: MSMg01no169_j08.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:39:19 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
TCAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGA
ATTCATTAAAAGATCTGGGGAATTGGGATATTAATTCTAAATCATTACAT
ATTATAGATTTTCTGGAAACAAGTAGGGGGACATGGCAAGGAGAGGAGAC
AGGAGAGATTTTATTTGACTCTTAGCCAGAAGTTGGTCTCCTGAGATCAA
CCCAAAGAGTTCTTTTTAAAAAGCATAAGTTTATAACTCTTAAAAAGATT
TAAGCAGATATTGTCACAGTGTAGAAGGTGACACAAGACAAAGTTGAGTC
ATGAACACCAGATGCCATATATGGAAGAAGAAAAAGATAATCTGGATAAA
AGAGTGTGTTTTTAATTTCGCCCTCCCCCGCACTATAGGACATAATTTTC
TGGTAGGAATTTTGTCAGTGCCTCTGTCCTACAGAGCATTTGAACTGAGA
CTGTTAATAATAGTAAACATTACTATAAATATATTGTGGCATGTTTCTTT
TTCCTTTTCAATTTAGAGCTTCGCTGCTCTCTTTCCAGATTATTTTTTAC
TCAGACAATTTGGCACTAGTTAGTTGATGTGTGGGTGGGTGTATTTTCTC
ACCTGCACAATTAACTTGAAGTTATTTTTGGAATCATTTTCATTTCCAGC
TATTATGATGATACCATACTTGGGAAAAATGCTGTTGAGTTTGAATTCAG
AGATTCTGAATATCTAAGGGCAAAATG
AACGATGAAGCCGGAAGCCCGGCCGCXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXAAATTCACGGGGATTAAAAAGAATTCAGG
AATTCCCAACAATCAAAAGTGGGCCTCCTAAAAGTAAGGAAGGGGATCTG
GGGATCAATGAAAGGGTACCCATTAACCCCTCCTCCAAGGCAGGTAACCT
GGGGGAATTTCACCAAAACCCCCGAACAAGTGGGGCCATAAAATCCTTAA
AACTGGCATTGGTTAAGTCCAAAGAAGGAAAACCACCCCCCCACACCCCC
CCCAACCCACCCAAACAAAAACCACCTAATTTTATAATTAAGGCCCAAAA
AAAAAAAAGAAAAAGTTTGGGTGNGTTCCCCACACCCCCATATTTCTTTA
TGGATAAATGATTGGAATAAATGGTTTTAAAAAAAAAAAAAAAAAAATTC
CGGATAGGAACTTAGGGGCCAAAAACTTAAATATGCCCGGCCGAATAAGG
CGGCCTAACCCGCGGCAAAGCCGGCATCTTAATGGCAACACCCCCTGAAA
ACTCAGGCAAGGTTTAAAAGAAGGCTATTTCCGGTCCCGACCACTTTCTC
AAAAATCCCTGAGAGGTAAAAGGAAACCCCGAAGTACAGGGTCCTCACCG
GCGCGACCTTAATGAAACTTGACGCAAGAATGGGAAATGTCCATCACACC
CAAATGCCCAAAAAGAAATGAGACATTTCACN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no169_j08.b1 MSMg01no169_j08.b1 CHROMAT_FILE:
MSMg01no169_j08.b1 PHD_FILE: MSMg01no169_j08.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:39:18 2005
         (315 letters)



>mm_chr6_98361235_98361949
          Length = 715

 Score =  600 bits (310), Expect = e-176
 Identities = 310/310 (100%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattcattaaaagatctggggaattgggatattaattctaaatcattacatattataga 64
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattcattaaaagatctggggaattgggatattaattctaaatcattacatattataga 264

                                                                       
Query: 65  ttttctggaaacaagtagggggacatggcaaggagaggagacaggagagattttatttga 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 ttttctggaaacaagtagggggacatggcaaggagaggagacaggagagattttatttga 324

                                                                       
Query: 125 ctcttagccagaagttggtctcctgagatcaacccaaagagttctttttaaaaagcataa 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 ctcttagccagaagttggtctcctgagatcaacccaaagagttctttttaaaaagcataa 384

                                                                       
Query: 185 gtttataactcttaaaaagatttaagcagatattgtcacagtgtagaaggtgacacaaga 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 gtttataactcttaaaaagatttaagcagatattgtcacagtgtagaaggtgacacaaga 444

                                                                       
Query: 245 caaagttgagtcatgaacaccagatgccatatatggaagaagaaaaagataatctggata 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 caaagttgagtcatgaacaccagatgccatatatggaagaagaaaaagataatctggata 504

                     
Query: 305 aaagagtgtg 314
           ||||||||||
Sbjct: 505 aaagagtgtg 514


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 15
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 315
Length of database: 715
Length adjustment: 9
Effective length of query: 306
Effective length of database: 706
Effective search space:   216036
Effective search space used:   216036
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)