BAC Information

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BAC

Clone NameMSMg01-169P08
Chromosome6 (Build37)
Map Location 10,331,784 - 10,332,088
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC330264
Downstream geneLOC100040285, LOC667650, AA545190
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-169P08.T7 (MSMg01no169_p08.b1)MSMg01-169P08.TJ (MSMg01no169_p08.g1)
ACCAG366673AG366674
length720720
length of high quality
(start - end)
310 (44 - 353)182 (74 - 255)
definitionCHROMAT_FILE: MSMg01no169_p08.b1 PHD_FILE: MSMg01no169_p08.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:39:47 2005CHROMAT_FILE: MSMg01no169_p08.g1 PHD_FILE: MSMg01no169_p08.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:39:47 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
CTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCCGCGGA
ATTCCAATCCACTACCCACAACTGGGTGGAGATTCCCTGCTTCTTCAGAA
AACAGTCCGGAGCAGAGATTCCATTCTCTACTACAGACTTCATAGATTCA
GAGAAGTTCTTGTAGGTTGCCTCAGCCACACCATTATTCCATCACTATCT
ACATCTCTGCAACCCTATCTCCAGGACCTTGCCTTTGCCCTAATACTTGC
ATTGACAAGCACATAAACTTCCCACTCTACTAGAGACCTTACATACTGGG
ATAATTCCTTCCCCCTTCTAACTCTCCTACTCTCTCACCAGATCTCTCAG
TCTCTTGTTATTCTACCCGACCTAANCTGGNCTCCAACAGTGTCAGAGGC
TTCCTATTCTACCAGAGACTACATGAATTAGGAGAAACCCAGGTAGGCTG
TTTGCCAGCCAAACTCCCTACTCTATCACTATCTCTTAGTCTCTACATCC
TATTGCCAGTGCCGAACCATCCTAATTGCCTTTCACCACCCTACAGCTGG
TAGAGGAACTCTAGGGTCTACCAAAAACACACACAGACTGGACGCCCAGG
CTACACAGATCAGAAGAACAAAGAGGAAACAGAAAATAAGGGGGGAAACA
TCCATCCATCAAAGATAAACTCCAAAATCTGTAACTAGTCTCTTAATCAT
CCCTAAACCAGATTATCTAC
CGAATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXAACTGGCAGTTTCCATGTAGAAGACTG
TGAATTGATCTATTCTTCTCTCCTTGTACAAAGCTCAAGTCAAAGTGGAT
CAAGGAACTCCACATTAAACCAGAGACACTGAAACTTATAGAGGAGAAAA
TGGGGAAAAGCCTGGAAGATATGTGCACAGGGGAAAAATTCCTGAACAGA
ACAGCAATGGCTTGTGCTGTAAGATCAAGAATTTACAAATGAGAACTCAT
AAAATTGCAAAGCTTCTGTAAGGATTCCGACACTGTCAATAAGAAAAATG
GCAACCAACATAAGTGATTTAAACCCCCACCACTTCTAAACCTGATAGGA
GCTAATACCCAATATATATTAGGAACTCAAAAAATTAGACTACGGATCGC
GCCGTAATCCCGTTAAAAATGTGGTACAAAGCTAAACGAAGAATCCTCAA
CGGAGGAATACCGAATGGCTGACAAGAACCTAAAAAATGTTCAACATCCT
TTATCATCTGGAAAATGCAAATCCAAAAAACCCTGAGATTCCCCCTCCCA
CCAGTCCGAATGGCTAAGATCAAAACCTCCCAGGCACCGCCATGTTGCCG
AACATGACTAGAACGAGGACCCCTTCCCCCCTGCTGCCGCCATTTCAAGC
TAGCACAGCCCCTGTGAAAA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no169_p08.b1 MSMg01no169_p08.b1 CHROMAT_FILE:
MSMg01no169_p08.b1 PHD_FILE: MSMg01no169_p08.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:39:47 2005
         (310 letters)



>mm_chr6_10331579_10332288
          Length = 710

 Score =  528 bits (273), Expect = e-154
 Identities = 297/305 (97%)
 Strand = Plus / Plus

                                                                       
Query: 6   gaattccaatccactacccacaactgggtggagattccctgcttcttcagaaaacagtcc 65
           |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 206 gaattccaatccactacccacaaccgggtggagattccctgcttcttcagaaaacagtcc 265

                                                                       
Query: 66  ggagcagagattccattctctactacagacttcatagattcagagaagttcttgtaggtt 125
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 266 ggagcagagattccattctctactacagacttcatagattcagagaagttcttgtaggtt 325

                                                                       
Query: 126 gcctcagccacaccattattccatcactatctacatctctgcaaccctatctccaggacc 185
           |||||||||||||| ||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 326 gcctcagccacacccttattccatcactatctacatctctgcaaccctatcttcaggacc 385

                                                                       
Query: 186 ttgcctttgccctaatacttgcattgacaagcacataaacttcccactctactagagacc 245
           ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 386 ttgcccttgccctaatacttgcattgacaagcacataaacttcccactctactagagacc 445

                                                                       
Query: 246 ttacatactgggataattccttcccccttctaactctcctactctctcaccagatctctc 305
           |||||||||||||||| ||||||||||  | |||||||||||||||||||||||||||||
Sbjct: 446 ttacatactgggataagtccttcccccaccaaactctcctactctctcaccagatctctc 505

                
Query: 306 agtct 310
           |||||
Sbjct: 506 agtct 510


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 310
Length of database: 710
Length adjustment: 9
Effective length of query: 301
Effective length of database: 701
Effective search space:   211001
Effective search space used:   211001
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)