BAC Information

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BAC

Clone NameMSMg01-170D12
Chromosome6 (Build37)
Map Location 94,974,305 - 94,974,611
singlet/doubletsinglet
Overlap genenone
Upstream geneMagi1, LOC100043262, LOC665856, Slc25a26, Lrig1, LOC625941, EG665865, LOC100043276
Downstream geneLOC100043680, Kbtbd8, LOC435912, Suclg2, LOC665886
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-170D12.T7 (MSMg01no170_d12.b1)MSMg01-170D12.TJ (MSMg01no170_d12.g1)
ACCAG366859AG366860
length721724
length of high quality
(start - end)
311 (36 - 346)283 (77 - 359)
definitionCHROMAT_FILE: MSMg01no170_d12.b1 PHD_FILE: MSMg01no170_d12.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:40:07 2005CHROMAT_FILE: MSMg01no170_d12.g1 PHD_FILE: MSMg01no170_d12.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:40:07 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCACCCT
AGAGACTCCCCAGTGTGAACTCTGAACTAACCACATCCATTATGCATGTG
AGAGTGAAGAGAGGGTGTGAGTGTGCGGAAGTGAGATGCTGTGATTAATG
CACCTGTCAGAAGTCAGAACGCTCTGCCAGCTGGTGATCTGCCTTAAGCT
CCTCTTCCCAAGAGTTATATTACAAACATGCCAGTTGTTCAACATGACAC
CACCATTTGTTTTTAGTGGGGACCACCTAGAACTGGTCTGTAGACTCACA
GTTCTGTGTTGAAATAATTAAGAAAATAGCGTCTTCATCTTGGGAATGCC
TTTGTTCTCNNAGACGATGCATAGGATTTGATGGGGGGCCGGGGAGGGGG
CCCAGATCAACTACAAAAAACTCCATTATGGGCATTCGCAAGAAACTCTT
GGCTGGGGATAAGATAGGTGTTTGATAAAGGTAGGTTTCTGAGTCTACAG
AGACTTTGCACACAGAAGCAAGGTTCTTCCCACAGTTACAGAGCTCTTAA
AATAATTGATCCTAGGAAATAAGCTTGCACTCTAGTGATTTAAATAATCA
CTCATAGAACATTCACGAAGGCTGCCATGATGGGAGATCTCCTGGCTCAC
TAGAACAAACCTCTTTATAATGACAGTCTGACCTGCTTTCTGACTATGGC
TATTCTTTCTTAATTGTCCTG
CGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXAAGAAGTTAGACACCAATGATCAA
AATAACCCAATTAAAAAATGTCATACCTGGGGATCCATCTAATATACAGT
TACCAAACCCAGACACTATTGTGGATACCAATAAGTGCTTACTGACAGAA
GCCTGAAGTAGCTGTATCCTGAGAGGCTCAGCCAGTACTTGACAAATACA
GAGGTGAATGGTCACAGCCATCCATTGGACTTAGCACAGGGTCCCCAATG
GAAGAGCTAGAGAAAGGACACAATGAGCTGAAGGGGTTTGCAGCCCCATA
GGAGGAACATCAATTGTATCACNNAGCANNCCCAGAGCTCCCAGGGACTA
AACCACCAACTAAAGGGTACACATGAAAAAAACCCATGTCTCCAGCCGCA
TATGTAGTAGAGAATGGTCTTGTGGGACATCAATGAGAGGAGAGGCCCTT
GGTCTTGTGAAGGCTTGATGCCCCAGTGTAGCAGAATGCCAGGACAAGGA
AGTGGGAGTGGGTGGGTTAGTGAGCAGGGGGAGGGAGGATGNNTCTCCCT
TCTCCTTCTTCTTCCCTTTTTCTCTTTCTTTTCCTCCTCTTCTTTTTCTC
CTCTTCTTTCTCTCTTTTTCTCTTCTTCTCTCCCTCCTTTCCCTTTCTTT
TCTCTTTCTTTTTTTCTCTCTTTN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no170_d12.b1 MSMg01no170_d12.b1 CHROMAT_FILE:
MSMg01no170_d12.b1 PHD_FILE: MSMg01no170_d12.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:40:07 2005
         (311 letters)



>mm_chr6_94974101_94974811
          Length = 711

 Score =  586 bits (303), Expect = e-172
 Identities = 306/307 (99%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattcaccctagagactccccagtgtgaactctgaactaaccacatccattatgcatgt 64
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| 
Sbjct: 205 gaattcaccctagagactccccagtgtgaactctgaactaaccacatccattatgcatgc 264

                                                                       
Query: 65  gagagtgaagagagggtgtgagtgtgcggaagtgagatgctgtgattaatgcacctgtca 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 gagagtgaagagagggtgtgagtgtgcggaagtgagatgctgtgattaatgcacctgtca 324

                                                                       
Query: 125 gaagtcagaacgctctgccagctggtgatctgccttaagctcctcttcccaagagttata 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 gaagtcagaacgctctgccagctggtgatctgccttaagctcctcttcccaagagttata 384

                                                                       
Query: 185 ttacaaacatgccagttgttcaacatgacaccaccatttgtttttagtggggaccaccta 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 ttacaaacatgccagttgttcaacatgacaccaccatttgtttttagtggggaccaccta 444

                                                                       
Query: 245 gaactggtctgtagactcacagttctgtgttgaaataattaagaaaatagcgtcttcatc 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 gaactggtctgtagactcacagttctgtgttgaaataattaagaaaatagcgtcttcatc 504

                  
Query: 305 ttgggaa 311
           |||||||
Sbjct: 505 ttgggaa 511


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 16
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 311
Length of database: 711
Length adjustment: 9
Effective length of query: 302
Effective length of database: 702
Effective search space:   212004
Effective search space used:   212004
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)