BAC Information

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BAC

Clone NameMSMg01-170H09
Chromosome6 (Build37)
Map Location 16,297,401 - 16,297,705
singlet/doubletsinglet
Overlap genenone
Upstream geneFoxp2, Mdfic, LOC100041116
Downstream geneTcfec, EG435881, Tes, EG232599, Cav2, Cav1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-170H09.T7 (MSMg01no170_h09.b1)MSMg01-170H09.TJ (MSMg01no170_h09.g1)
ACCAG367019AG367020
length734710
length of high quality
(start - end)
309 (48 - 356)222 (125 - 346)
definitionCHROMAT_FILE: MSMg01no170_h09.b1 PHD_FILE: MSMg01no170_h09.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:40:25 2005CHROMAT_FILE: MSMg01no170_h09.g1 PHD_FILE: MSMg01no170_h09.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:40:25 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
TATCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGC
GGAATTCTCAACAGAGCAATCTCCTGAATGGCCAAGAAGCACTTAACAAA
ATCTTCAGTGTCCTTAGTCATCAAGGAAATGCATATCAAAATGACCTTAA
TCATATTAGTTGTAGCAATGAACAATAACCCAGAAGATTCCTAAGAATTC
AAAGTCATAGATCATGTTAAGACTTAAAGCAAGAAACCTGGTGTCATCTG
CAGTATGACCACTGTTTCCTGACCAGTCGTTTTCATGGCACCAATTAACA
CAGAAACACTGCAGGGTATAGTCTGGTATCTATCATACTGCAAAAAACAG
CCACCATTAAATGNNTTGCAANTCTTGACCACCAGAATGTCTCAGAAATA
CAATAGATCCTTTAATAAGATGAAATAATGCCTCCTATTACATAGCATGC
TAAGTTAAATGGGAATCTATAAAACATAAGAAGCACACGAGATGGTTGCC
AAAGGTAGATAAAAGCAAAACAAATATCTAGGAAATAAATAAATAAATAA
GTAAAAAGCTCCCCTTAGGAAGGGTAGAATTGAAGCTTTAAGGGACTTCT
ATGCTGTGGACTTGGTGGTATGTTATTAAGGTGGGGGTGAGGGGGGCCAA
CCTTTTATTTCCAATTTGAGACCCTCCCTCCCTTTGCCTATCTTCATTCC
GCGTTGCAGTCCTCTTTTTGTTTTCGTCCTCCCC
CGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXCAGGCTGAGGGTTTGCTGCTCTTT
TTTTGGTTAAAAATGTTGAGCCACTGAAGGTTTTAGACTAGGGGAGTGAA
CTGACCTGTAGGTCAATTACTCTGGCTGCAATGTGTAAAGTAGATTGGAA
GAGGGAGAGAATAAAAGTGAAGAGACACCCTAGGAGGCTATTGAATTAGA
TCAGGTGACAGGTAATGAAACTCTCAACTGGGATAGTGGCAGGAGGATGC
AGAGAAATAGGAGAAATTCTTGAGATCTTTCGTGGGTCAAATCTGGTGGG
NTTATTTTACTANGTCCCNTGAGCGAANCGTTAAAAAAGATTGCGGAGAT
TTTCAAGCCTGAGTTTCTGAGAACAAAGAAAGGTAGGGACATTGACTGAA
AGGCAGTTGGAGTGATCGTGGGCATGTGCAGATGGGATAGTGATGATGAT
TTTTCTGGTGCTAGAACTTCAGTGGGGAGCAGGTACTGAGATGGGTTTCC
ATGCACCATCCTCCTAAGTACTGAATAGTAGCAGTTTTCAGGGACTTAGT
GAGGGATAGTCTAGACTTAGGGAGATAGTAGGTAACTTTCAGTTGATTCT
CATTACAAAACATACTGAATAAATCCTAACACTTCCCAAAAGTCATTTTC
AATCACTTGG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no170_h09.b1 MSMg01no170_h09.b1 CHROMAT_FILE:
MSMg01no170_h09.b1 PHD_FILE: MSMg01no170_h09.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:40:25 2005
         (309 letters)



>mm_chr6_16297197_16297905
          Length = 709

 Score =  559 bits (289), Expect = e-164
 Identities = 301/305 (98%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattctcaacagagcaatctcctgaatggccaagaagcacttaacaaaatcttcagtgt 64
           ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattctcaacagagcaatctcccgaatggccaagaagcacttaacaaaatcttcagtgt 264

                                                                       
Query: 65  ccttagtcatcaaggaaatgcatatcaaaatgaccttaatcatattagttgtagcaatga 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 ccttagtcatcaaggaaatgcatatcaaaatgaccttaatcatattagttgtagcaatga 324

                                                                       
Query: 125 acaataacccagaagattcctaagaattcaaagtcatagatcatgttaagacttaaagca 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 acaataacccagaagattcctaagaattcaaagtcatagatcatgttaagacttaaagca 384

                                                                       
Query: 185 agaaacctggtgtcatctgcagtatgaccactgtttcctgaccagtcgttttcatggcac 244
           |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 385 agaaacctggtgtcatctgcagtatgaccactgtttcctgaccagtcgttttcagggcac 444

                                                                       
Query: 245 caattaacacagaaacactgcagggtatagtctggtatctatcatactgcaaaaaacagc 304
           ||||||||||||||||||||||| |||||||||||||||||||||| |||||||||||||
Sbjct: 445 caattaacacagaaacactgcagtgtatagtctggtatctatcatattgcaaaaaacagc 504

                
Query: 305 cacca 309
           |||||
Sbjct: 505 cacca 509


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 14
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 309
Length of database: 709
Length adjustment: 9
Effective length of query: 300
Effective length of database: 700
Effective search space:   210000
Effective search space used:   210000
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)