BAC Information

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BAC

Clone NameMSMg01-170N10
Chromosome6 (Build37)
Map Location 61,471,899 - 61,472,188
singlet/doubletsinglet
Overlap geneC130092O11Rik
Upstream geneSnca, ENSMUSG00000064018, Mmrn1, LOC100041756, LOC100041764, LOC100042694
Downstream genenone
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-170N10.T7 (MSMg01no170_n10.b1)MSMg01-170N10.TJ (MSMg01no170_n10.g1)
ACCAG367278AG367279
length700716
length of high quality
(start - end)
315 (46 - 360)285 (77 - 361)
definitionCHROMAT_FILE: MSMg01no170_n10.b1 PHD_FILE: MSMg01no170_n10.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:40:54 2005CHROMAT_FILE: MSMg01no170_n10.g1 PHD_FILE: MSMg01no170_n10.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:40:54 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
CTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGG
AATTCTCACAGGAAAATTCACAGTGCATTTTATTTATTTATTTATTTATT
TATTTATTTATTTATTTATTTATTTACTGAAAACCAAGAATTTTAAAAAC
CCACTTTCTATTTCTTTTTGGTTTCTTCATTTTCACAAACAGTGGGGAGC
TGGGGGAAGCAAAGAAAGTGCGGACTTCACTCAGTAGCCTATATATAAAA
ACATGTTGGCACAGTGCAGACATATTAGAAGGTCATAGTGAGGGACTTTC
TATAATACAGAAGAATAGCGACAGCCTGATATGCATCAGCCAGTGACTGT
GGTTTTAAATCATCTACAAAGCGAGCCTTTATTTGTGTCTCTGTGTGAAC
ATTTTTGGCTACAATCCAAAGAAATTTACTTTTCTTGTTTCGAAGAAAGC
CTGCTTGGCTCATCCCTTTAATCAGCAGTGGTATTGTGTCATTACACTCC
CATGAGAACTTGTTTGATGGAAGCTTGTGATGTGCTCAGTATCAAATAAC
TCTTCAATTCAAATTGTATCTTTTGAAATGTCAGAATGATTTAATTTTCA
GGAAAATCACAAGGGACACCCTTAGAGAAATAGTATGTAAGTGATATTTT
TATTATTAAATAATGAATACAAATTACTGCTTTCTTGTAAATTACTAAAA

CGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXCAGAAGATTAAGACAGGGAGATCT
CAGAACTCAAGGTTATCTGGGATTAAGGGTGTGGTAGCACACACCTTTAA
TCTGGGCTATACATTCTGCTGGAGACCTGCCTAAGGACAATGGAAGAAGG
AAGACTCTCTCCTTTGCCTGCTTGCCTTGTGGAATTGAGCAACTGCTAGA
TCCTTGGACTTCCATCCACAGCTGCTGCTAACCATTGTTGAGAATTGGAC
TACAGACTGTAAGTCATCAACAAATTTCTTTACTATATAGAGACTACTCA
TAAGTTCTGTGTTCTCTAGACCACCCCTCCCTTATACACGTGGTAAAAGA
AGAAAACATTAAAGCATGGCAATCATGTATAACGCATAAAGGATATTCAA
AGAAAGGCAAAGATGCTTAGTGTAGAAGAAGTAACAATCACAATGTACTA
TGACTGCTGTGGGGCCAACCTGTCCATCTACAAGGCAATGCATGGTGGGA
AAGAAGGGCAATGATATTGCCACCAAAGAATAGAGAAGGCCCCAAGGAGA
AGAAAACACTGGAGGGAAGACGTGATCTTATCAAAGTCCATTTACATAGG
CTAAGAGTTCTGACTCGAACATGACTGATTTGTGGGCACAATTACTCTAG
AAAAATACCTACTCTC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no170_n10.b1 MSMg01no170_n10.b1 CHROMAT_FILE:
MSMg01no170_n10.b1 PHD_FILE: MSMg01no170_n10.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:40:54 2005
         (315 letters)



>mm_chr6_61471675_61472388
          Length = 714

 Score =  489 bits (253), Expect = e-143
 Identities = 287/311 (92%), Gaps = 21/311 (6%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattctcacaggaaaattcacagtgcattttatttatttatttatttatttatttattt 64
           |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||   
Sbjct: 225 gaattctcacaggaaaattcacagtgaattttatttatttatttatttatttattta--- 281

                                                                       
Query: 65  atttatttatttatttactgaaaaccaagaattttaaaaacccactttctatttcttttt 124
                            ||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 282 -----------------ctgaaaaccaagaattt-aaaaacccactttctatttcttttt 323

                                                                       
Query: 125 ggtttcttcattttcacaaacagtggggagctgggggaagcaaagaaagtgcggacttca 184
           ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 324 ggtttcttcattttcacaaacagtggggagctgggggaagcaaagaaagagcggacttca 383

                                                                       
Query: 185 ctcagtagcctatatataaaaacatgttggcacagtgcagacatattagaaggtcatagt 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 384 ctcagtagcctatatataaaaacatgttggcacagtgcagacatattagaaggtcatagt 443

                                                                       
Query: 245 gagggactttctataatacagaagaatagcgacagcctgatatgcatcagccagtgactg 304
           |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 444 gagggactttctataatacagaagaatagcgacagcctgatatgcatcggccagtgactg 503

                      
Query: 305 tggttttaaat 315
           |||||||||||
Sbjct: 504 tggttttaaat 514


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 24
Number of extensions: 7
Number of successful extensions: 7
Number of sequences better than 10.0: 1
Number of HSP's gapped: 3
Number of HSP's successfully gapped: 1
Length of query: 315
Length of database: 714
Length adjustment: 9
Effective length of query: 306
Effective length of database: 705
Effective search space:   215730
Effective search space used:   215730
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)