BAC Information

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BAC

Clone NameMSMg01-171D06
Chromosome6 (Build37)
Map Location 48,111,208 - 48,111,518
singlet/doubletsinglet
Overlap genenone
Upstream geneCntnap2, LOC100041078, A930035D04Rik, Cul1, Ezh2, Rn4.5s, EG384379, Pdia4, LOC100041154, Zfp786, Zfp398, Zfp282, Zfp212, A230106D06Rik, AI894139, LOC623601, Zfp777, Zfp746
Downstream geneLOC665990, Krba1, Zfp467, Sspo, EG666005, Atp6v0e2, Lrrc61, Rarres2, EG330305, Repin1, Zfp775, AI854703, Gimap8, LOC100040560, Gimap9, Gimap4, Gimap6, Gimap7, LOC100041450, Gimap1, Gimap5, Gimap3, Tmem176b, Tmem176a, EG666105, Abp1, 1600015I10Rik, LOC100040589, Doxl2, Svs1, Gpnmb, LOC666011, Igf2bp3
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-171D06.T7 (MSMg01no171_d06.b1)MSMg01-171D06.TJ (MSMg01no171_d06.g1)
ACCAG367520AG367521
length725741
length of high quality
(start - end)
318 (45 - 362)124 (125 - 248)
definitionCHROMAT_FILE: MSMg01no171_d06.b1 PHD_FILE: MSMg01no171_d06.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:41:22 2005CHROMAT_FILE: MSMg01no171_d06.g1 PHD_FILE: MSMg01no171_d06.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:41:22 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
TCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGA
ATTCTGTAATCTAAGAACCACTGATGGTTCTTTCTAATAAAACCTAGCTT
TTTTAGGTTTAGGAAATTTATTCTACATTGTAAAACTGTAGAAGACTTGC
TCACATAAAAGACTCGAGATCCAAAAAGCACATAGTCAGCTATGTGTGAG
GGATCTGATGGGGAATAAAACAAGGGTGCCCTCCACTGGGGTGAATCTCG
AACCATGAGTCAAGAGAGAAAGTAGGTCTACATACCCTGAATGTGGTCAG
TTAGTTTCTAAAATCACACGAATAGAGGGCACCTGGATTTGGACAAGGGA
CCTCTTGATTTGTTTTTCCCCCCCCCACCCCTGAGCTATACCCTCACTGG
TAGCAGTATGCACAGTTAATAATTATATTCTGAGTATTGATATATTAGGA
CTGACTTTAAAGTTAAATTACAGATGCTCATAGACCTACTTTCCAGAAGT
TGCCAGACGTGACTGGTGAGATGCCTTTCTCAGCTCTGCAGNTTCACTAT
ACCTATATAAACTACGTATATACCCTTCCCAGGCCTATCTTTGAGCAGCA
TCACCAGCCTAGTAAACAGAGAGTATCAAGTTGCCTGCAGACCCTGAGTC
CACTTCACACTGTTGTCCTAGGTTAGTTCTGATATGTTCACTGCCTTTCA
TCTGATCCCCTATACACCCCTTTTT
CATGACXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXCTGATAAGGAGACTTGGTGAAGACAGT
CTATTTCCAGAGGTCTTTGGCCCGGTAGCTGCAAGTCTTGGAGATGGCAT
CAAAGGTGGCCTTGGCAAAGTTGCCCAGGGTGGTAGTGCAGCCTCTGGCT
GAAGTGTAGCAGTCATCTATACCGGCCATCATCAGGAGCTTCTTGGTCTT
TTGAGTATAGACAATGCCAGTGCCTCTGGGGGCAGGGATGGGACGCACCA
GCACAGAGCCACAATTTTTTTTTCACCTTGCACGGAACAGTGAGGGGCCC
GCCTATTAAGTAATTCCCNAGGCTNTGCCCACAGGGANAANGGAAAGNNG
GGNCAAGATGANGGCCTCACAANNGGAAGNAAAAACCTCCTTGGAGCACT
TAACACCTAGACCAACGTGACCATTGTAGTCCCCAATAGGGACGAATGCC
TTCAACCTGGTCCGCTGGCCAGCCGGATTCTGCTTCCGCACTGGCATGAT
TCTCACAACGTCATTCTTTATGTATGTTTCCATCAAATACCCCCTGATTT
CACATTTTTTAATGTTTATGTTATAACTAGCTATCTTCCCAGAATTTGTT
TTTTTTTGTTTTTAATCCCCCCGGCCCATCTACGCGACATGGCACCCTTT
ACCCCGTCTTTTGCCTTTATCTCCACTATTTCCATTGTTCC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no171_d06.b1 MSMg01no171_d06.b1 CHROMAT_FILE:
MSMg01no171_d06.b1 PHD_FILE: MSMg01no171_d06.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:41:22 2005
         (318 letters)



>mm_chr6_48111041_48111758
          Length = 718

 Score =  540 bits (279), Expect = e-158
 Identities = 303/311 (97%)
 Strand = Plus / Minus

                                                                       
Query: 5   gaattctgtaatctaagaaccactgatggttctttctaataaaacctagcttttttaggt 64
           ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 478 gaattctgtaatctaagaaccactgatggttctttctaataaagcctagcttttttaggt 419

                                                                       
Query: 65  ttaggaaatttattctacattgtaaaactgtagaagacttgctcacataaaagactcgag 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 418 ttaggaaatttattctacattgtaaaactgtagaagacttgctcacataaaagactcgag 359

                                                                       
Query: 125 atccaaaaagcacatagtcagctatgtgtgagggatctgatggggaataaaacaagggtg 184
           |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 358 atccaaaaagcacatagtcagctatgtgtgagggatctgatgggaaataaaacaagggtg 299

                                                                       
Query: 185 ccctccactggggtgaatctcgaaccatgagtcaagagagaaagtaggtctacataccct 244
           ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 298 ccctccactggggtgaatctccaaccatgagtcaagagagaaagtaggtctacataccct 239

                                                                       
Query: 245 gaatgtggtcagttagtttctaaaatcacacgaatagagggcacctggatttggacaagg 304
           |||||||||||||| ||||||||||||||||||| |||||||||||| ||| | ||||||
Sbjct: 238 gaatgtggtcagtttgtttctaaaatcacacgaaaagagggcacctgaattcgaacaagg 179

                      
Query: 305 gacctcttgat 315
           |||||||||||
Sbjct: 178 gacctcttgat 168


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 15
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 318
Length of database: 718
Length adjustment: 9
Effective length of query: 309
Effective length of database: 709
Effective search space:   219081
Effective search space used:   219081
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)