Query= MSMg01no171_l21.b1 MSMg01no171_l21.b1 CHROMAT_FILE:
MSMg01no171_l21.b1 PHD_FILE: MSMg01no171_l21.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:42:02 2005
(221 letters)
>mm_chr6_4538335_4538958
Length = 624
Score = 383 bits (198), Expect = e-111
Identities = 212/218 (97%), Gaps = 3/218 (1%)
Strand = Plus / Minus
Query: 5 gaattccttcttagtcttttcatggtatacacaactttgtccagctgcggtttgcagttc 64
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 422 gaattccttcttagtcttttcatggtatacgcaactttgtccagctgcggtttgcagttc 363
Query: 65 gagacaacacaggaaaatttgaaggcccttaggtaagaactcgaaaaaaatagaagttct 124
||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 362 cagacaacacaggaaaatttgaaggcccttaggtaagaactcgaaaaaaataaaagttct 303
Query: 125 cacagagtcctgggggaaaatgattctggctattaaatatgaatttaaccgaggatagga 184
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 302 cacagagtcctgggggaaaatgattctggctattaaatatgaatttaaccgaggatagga 243
Query: 185 taaccaagaggac---ataatatgtcactgttgagtgc 219
||||||||||||| ||||||||||||||||||||||
Sbjct: 242 taaccaagaggacataataatatgtcactgttgagtgc 205
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 10
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 221
Length of database: 624
Length adjustment: 9
Effective length of query: 212
Effective length of database: 615
Effective search space: 130380
Effective search space used: 130380
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
| Query= MSMg01no171_l21.g1 MSMg01no171_l21.g1 CHROMAT_FILE:
MSMg01no171_l21.g1 PHD_FILE: MSMg01no171_l21.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:42:02 2005
(249 letters)
>mm_chr6_4393021_4393670
Length = 650
Score = 437 bits (226), Expect = e-127
Identities = 246/257 (95%), Gaps = 9/257 (3%)
Strand = Plus / Plus
Query: 1 tctctctctctctctctgatgagcactccatgtgagcatgagtctgccacactctccttc 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 195 tctctctctctctctctgatgagcactccatgtgagcatgagtctgccacactctccttc 254
Query: 61 tgtcatcagattccctagttttgttatgaactggggggggggg-------gtaatcctgn 113
||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 255 tgtcatcagattccctagttttgttatgaactgggggggggggggggggtgtaatcctg- 313
Query: 114 nctta-aaaagcctgtggtcatagtattaaaatgcctctcacaatgtcccacaccacaaa 172
|||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 314 tcttacaaaagcctgtggtcatagtattagaatgcctctcacaatgtcccacaccacaaa 373
Query: 173 cactgtagtattccttaagaaactgttcctgggacctaataggcacccagagtgctgctc 232
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 374 cactgtagtattccttaagaaactgttcctgggacctaataggcacccagagtgctgctc 433
Query: 233 agacaatgcaatgacaa 249
|||||||||||||||||
Sbjct: 434 agacaatgcaatgacaa 450
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 14
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 249
Length of database: 650
Length adjustment: 9
Effective length of query: 240
Effective length of database: 641
Effective search space: 153840
Effective search space used: 153840
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
|
