BAC Information

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BAC

Clone NameMSMg01-171M19
Chromosome6 (Build37)
Map Location 42,998,017 - 42,998,328
singlet/doubletsinglet
Overlap genenone
Upstream geneTas2r139, Tas2r144, Gstk1, Tmem139, Casp2, Clcn1, 6330503C03Rik, Zyx, Epha1, Tas2r143, Tas2r135, Tas2r126, Olfr458, Olfr457, Olfr456, LOC232745, EG546896, Eapa2, BC011487, 3321401G04Rik, LOC100039918, GA_x5J8B7W6337-801345-802245, Olfr453, Olfr38, Olfr452, Olfr451-ps1, Olfr450, Olfr449, Olfr448, Olfr447, Olfr446, GA_x5J8B7W6337-1014614-1015483, Olfr444
Downstream geneEG622841, Igk-V, Olfr443-ps1, GA_x5J8B7W6337-1183223-1183810, Olfr441, Olfr440-ps1, GA_x5J8B7W6337-1221999-1222591, Olfr438, Olfr437, Olfr13, GA_x5J8B7W6337-1270568-1271367, Olfr435, Olfr434, LOC665745, Olfr47, Arhgef5, Nobox, Tpk1, LOC665747, LOC546897, LOC665779
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-171M19.T7 (MSMg01no171_m19.b1)MSMg01-171M19.TJ (MSMg01no171_m19.g1)
ACCAG367922AG367923
length724775
length of high quality
(start - end)		316 (46 - 361)284 (75 - 358)
definitionCHROMAT_FILE: MSMg01no171_m19.b1 PHD_FILE: MSMg01no171_m19.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:42:06 2005CHROMAT_FILE: MSMg01no171_m19.g1 PHD_FILE: MSMg01no171_m19.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:42:06 2005
singlet/doubletsinglet---
BLAST hitpluralno hit data
sequence
TCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGG
AATTCCCTACATCAAGGATGCTGCCTTTTACCATAAAGAGTATTTAACAC
TTAAAAAGGAAGAATTATCTTTAACTTAGAAGAACATATCCCACGTACAA
GAAAAAATTACCCTTGACTATTAATAGTTTATTAGGGGCTTAACAGAGTA
ACCTACTGTAGTAGTGTTCTGTCAAATAAGGCTATAGGCCATTTGTGGAA
AGGGAAGGAGTTGAGGGTTTCATTAAAAAGCAATAGTCACAAATAATATA
AAATACCTTGGCATGACTCTAACTAAGGAAGTGAAAGATCTGTATGATAA
GAACTTCAAGTCTTNGTAGTTCGCCTTACAGACCTCAGAAGATGGAAAGA
TTTCCCATGCTCACGGATTGGCAGGATCAACATAGTAAAAATGGCTATCT
TGCCAAAAGCAATCTACAGATTCAATGCAATCCCCATCAAAATTCCTACT
CAATTCTTCAACGAATTAGAAAGAGCAATCTGCAAATTCATTTGGAATAA
CAAAAAACCTAGGATAGCAAAAACTCTTCTCAAGGATAAAAGAACCTCTG
GTGGAATCACCATGCCTGACCTAGAGCTGTACTACAGAGCAATTGTGATT
AAAAACTGCATGCTACTGGTATAGCAACAGACAAGTATACCACTGTAACA
GAATTGTAGACCCCGATTTGGACC

CGATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXTCTGTTTAGCTCTGTACCACGTTTTT
GAAAGGGTTATTTGGTTATCTGCAGTCTTCTTCAGAAAAAGAAAATTTAT
GTGGAGTTCCTTGATCCACTTAGATTTGACCTTAGTACAAGGACATAGGA
ATGGATCAATTTGCATTCTTCTCCATGATAACCACCAGTTGTGCCAGCAC
CATTTGTTGAAAATGCTGTCTTTTTTCCATTAGATGGTTTTAGCTCCCTT
GTCAAAGATCAAGTGAGCATATGTGTGTGGGTTCATTTCTGGGTCTTCAA
TTCTATTCTATGGTTCTTCTCCCATGCATTCCCCCAGTATTATGCAGTTT
TTATCCCAATTGCCCCCCACTACAAAAAAAAAAAAAAGAATGGTGATGTC
GTCAGAGGCTTTTTAATAGTTGAGAAAAGTTCTTGCTATCCCAGGTTTTC
TGTTTTCTATATCATTTTGATAATTGTAACCTTATTTCCAACCTATACTT
ACCCTCCCTCTTTATCCTTATATATCCCATTTAACCCCTATTTTCCCCTC
TTTTTTTCTCTCTATACCTTTCTTTATTTAAATTCCTTCTTCACTTCTTT
CCATTTTCCCTCTATTACACAACATTTCCCTTATTTTACTACCCTCCTTT
TTTTACCCGTCTACCTTACCCACTATATTTCTCCCCCATTTATTACCTAT
CTCTATTTACCCCCCATCCCTCCAN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no171_m19.b1 MSMg01no171_m19.b1 CHROMAT_FILE:
MSMg01no171_m19.b1 PHD_FILE: MSMg01no171_m19.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:42:06 2005
         (316 letters)



>mm_chr6_42997894_42998609
          Length = 716

 Score =  596 bits (308), Expect = e-175
 Identities = 311/312 (99%)
 Strand = Plus / Minus

                                                                       
Query: 5   gaattccctacatcaaggatgctgccttttaccataaagagtatttaacacttaaaaagg 64
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 435 gaattccctacatcaaggatgctgccttttaccataaagagtatttaacacttaaaaagg 376

                                                                       
Query: 65  aagaattatctttaacttagaagaacatatcccacgtacaagaaaaaattacccttgact 124
           ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 375 aagaattatctttaagttagaagaacatatcccacgtacaagaaaaaattacccttgact 316

                                                                       
Query: 125 attaatagtttattaggggcttaacagagtaacctactgtagtagtgttctgtcaaataa 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 315 attaatagtttattaggggcttaacagagtaacctactgtagtagtgttctgtcaaataa 256

                                                                       
Query: 185 ggctataggccatttgtggaaagggaaggagttgagggtttcattaaaaagcaatagtca 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 255 ggctataggccatttgtggaaagggaaggagttgagggtttcattaaaaagcaatagtca 196

                                                                       
Query: 245 caaataatataaaataccttggcatgactctaactaaggaagtgaaagatctgtatgata 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 195 caaataatataaaataccttggcatgactctaactaaggaagtgaaagatctgtatgata 136

                       
Query: 305 agaacttcaagt 316
           ||||||||||||
Sbjct: 135 agaacttcaagt 124


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 15
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 316
Length of database: 716
Length adjustment: 9
Effective length of query: 307
Effective length of database: 707
Effective search space:   217049
Effective search space used:   217049
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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