BAC Information

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BAC

Clone NameMSMg01-171N19
Chromosome6 (Build37)
Map Location 83,023,136 - 83,023,272
singlet/doubletsinglet
Overlap genenone
Upstream geneTmem166, EG622198, Tacr1, Pole4, LOC100043412, Hk2, EG622318, Sema4f, D6Mm5e, Dok1, Loxl3, Htra2, Aup1, Dqx1, Tlx2
Downstream genePcgf1, Lbx2, A230058J24Rik, Mrpl53, Gcs1, Wbp1, Znhit4, Rtkn, Wdr54, 1700003E16Rik, Dctn1, C330016K18Rik, Mthfd2, Mobk1b, Bola3, D230004J03Rik, Dguok, Actg2, Stambp, LOC664956, Clec4f, Cd207, Vax2os2, Vax2os1, Vax2, Atp6v1b1, 1700124L16Rik, Ankrd53, Tex261, LOC665004, Nagk, Paip2b, LOC384450, LOC622683, LOC380687, LOC665098, LOC676366, Zfml, Dysf, LOC665114
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-171N19.T7 (MSMg01no171_n19.b1)MSMg01-171N19.TJ (MSMg01no171_n19.g1)
ACCAG367965AG367966
length731734
length of high quality
(start - end)
189 (118 - 306)139 (71 - 209)
definitionCHROMAT_FILE: MSMg01no171_n19.b1 PHD_FILE: MSMg01no171_n19.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:42:11 2005CHROMAT_FILE: MSMg01no171_n19.g1 PHD_FILE: MSMg01no171_n19.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:42:11 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
XXXXXXXXXXXXXXXXXXXXXXAATGCCGCAGGNGCGCGGNAANCAGNCC
TCTTACCCCAAATAAAGGAAGNGNNGGGAGCCGCCCCCACATNCGCCGNC
ACAAGATTTTGCTCACAGCTGTGTTCTAAGTGGTAAACAAATAATCTGCG
CATGTGCCAAGGGTATTTCTCCACCCCATGTACTCTGCCTTCCCCGTGGC
AACAACTCGGCCATGGGCTGCAGCCAATCAGGGAGTGATACGTTCTATGC
GAAGGATAACTCTCCTTGAGAGGGAGGGGGTTTCGCTTTCGTTTTTCGGG
CTTGGTGTTTGTGTTTTTGCCCCCGAAGAAGNAAGCAACAAAGAATTTTT
TTTTTTTTTTCCGGACAGACCCCCCCNAAAAGAGGAGGNAGNGAGAANGC
GGGNNNGCCCCAAACNCCGAAGGCCAAAAAGCGGGGGCGGGGGGGGCGCC
CCGCCCCCCACACGAAAAGNACAACACAAGAAAACGAGAGAAACGCCCAC
ACAACAAAACCACACACGCACCCAGAAGACAAAGCACAAAAAAACGGAAG
AAAAACAAAAAAAAACAGCCCCAAAGGCGAGGGAGAGAAACAACCGNAGA
AAAAAAAAAAAAAAAAAACCGAAAAAACACCCAAGGGCAAAAACACGACA
ATTTTTTTTTTTTTTTTTACAAAAAAAAACCCAACACATTTTCACAACAC
ACTTTTTCCACCCATTTTTATTTACTCCTTT
TGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXTCAGGGATCGACCTGCCTTTCCCTGTTGAG
TGTACAACCACGGACAGCAACCCATTATTTCTTGAATTTTCTTTCCTTCC
TTTTTGAAATGTAAAATTACATTTATTTTTGGTGGTGTGTGTGTGTGTGT
GTGTGTGNNTNNNNNNNNNNNNNTTTTTTTTTTTTTTTTTTTTTTTTNTT
TTTTTTTTTNTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT
TTTTNTNTTTTTTNTTTTTTTTTTTTTTTTGNGTNTGTGGNTNNGNNGNG
GGGNGTTTTTGGGTGNGCCCTAAGACAAAAGCCCCTTTNAATTTTATGTT
TTGGTGTTTTTTGTCCCCCCCCAAAAATTTAGTTAAAAAATTGGGGGGGG
GGGGGGGCCTCTTCTAGCNTTTTCTCTTTTTTTTTCCTTTTTTTTTCTTT
TCTTCCCCTTTCTTTTTTTTCCTTTCTCTTCCTCCTCCTTTTTTTCTCTC
TTTTTTCCTTTTCCTTTTTTTTCTTTTCTTTCCTTCTTCTTCTTTCCCCT
TTCCGCTTTTTTTTGTCCCCTTGTTGCTTCTTTTTTTTTCCCCTTTCTAG
TTACCTTAATTTTTTGTTCTTCCCTGTGCCCCCCTTTTTCTTATTTTTTT
CTTTTTTTCTCTTTTTTCAGTTTTGATTTTGTGN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no171_n19.g1 MSMg01no171_n19.g1 CHROMAT_FILE:
MSMg01no171_n19.g1 PHD_FILE: MSMg01no171_n19.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:42:11 2005
         (139 letters)



>mm_chr6_83022936_83023474
          Length = 539

 Score =  265 bits (137), Expect = 8e-76
 Identities = 137/137 (100%)
 Strand = Plus / Plus

                                                                       
Query: 1   tcagggatcgacctgcctttccctgttgagtgtacaaccacggacagcaacccattattt 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 tcagggatcgacctgcctttccctgttgagtgtacaaccacggacagcaacccattattt 260

                                                                       
Query: 61  cttgaattttctttccttcctttttgaaatgtaaaattacatttatttttggtggtgtgt 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 cttgaattttctttccttcctttttgaaatgtaaaattacatttatttttggtggtgtgt 320

                            
Query: 121 gtgtgtgtgtgtgtgtg 137
           |||||||||||||||||
Sbjct: 321 gtgtgtgtgtgtgtgtg 337


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 21
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 139
Length of database: 539
Length adjustment: 8
Effective length of query: 131
Effective length of database: 531
Effective search space:    69561
Effective search space used:    69561
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)