BAC Information

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BAC

Clone NameMSMg01-172A04
Chromosome6 (Build37)
Map Location 129,766,237 - 129,766,549
singlet/doubletsinglet
Overlap genenone
Upstream geneKlrb1d, LOC667706, Clec2i, Clec2g, LOC667715, BC064078, Clec2f, Klrb1f, Clec2e, Klrb1-ps1, Clec2d, Cd69, 4922502D21Rik, Clec12a, 4933425B16Rik, Clec1b, Clec9a, Clec1a, Clec7a, Olr1, D630042F21Rik, Gabarapl1, Klre1, Klrd1, Klrk1, Klrc3, Klrc2, Klrc1, LOC640755, Klri1, Klri2, Gm156
Downstream geneKlra17, Klra5, LOC667764, Klra6, LOC100038893, LOC100038894, LOC100038895, Klra4, LOC667769, LOC100038897, Klra8, EG654449, Klra9, Klra7, LOC100038898, Klra12, Klra10, Klra13, Klra3, Klra1, LOC100038902, LOC100038903, LOC625436, EG625473, LOC640779, LOC667793, EG667798, EG625558, LOC625566, EG636947
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-172A04.T7 (MSMg01no172_a04.b1)MSMg01-172A04.TJ (MSMg01no172_a04.g1)
ACCAG368059AG368060
length714720
length of high quality
(start - end)
318 (46 - 363)296 (382 - 677)
definitionCHROMAT_FILE: MSMg01no172_a04.b1 PHD_FILE: MSMg01no172_a04.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:42:22 2005CHROMAT_FILE: MSMg01no172_a04.g1 PHD_FILE: MSMg01no172_a04.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:42:22 2005
singlet/doubletsinglet---
BLAST hitpluralno hit data
sequence
ATCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGG
AATTCTCCAGGCAGGTTCCTTACATCCAGGCATAGGTCTATAGACACGCT
CATGAGCCATGCTCTGAGCTCATAGGTATTGATTACTGCATTGCATGATG
CTCAGCTCAGTCTGTGACAATCAATATGTGTCATTTAACAAATGAATATT
TAACAGCATATCTTTTGCTAGAATTATTTTCACGTGCATGTACATGTGTC
TGTGCATTAGCATGTGTCTGTGGTTGTGATGTCTGTGAGAATGTATGCCA
CATGTATGTATCTTCCCAAGGAGGCCAGAAGAGGATATTGCATCTGCTGA
GCTGGAGTTATTTTTTTTTCTCCACCCACCCGATTTGCTTACTGAAAACC
AAACTTGAGTTCTGAAAAAACACCAAGCCCTCTTACCACCTCTCCGGCCG
CTTAACAGCAAATAGAACATTGGTTTTAAATTTAGCATGCAAGTAATTGT
AGTAATTCATTGCTTTTCTGTTTTTAAAGCCATCTTTTCTTGCATTTATA
AGTTTCAGTATTATCAAATAATCTGATACTCAGAATATATACCGTGTACA
TGATACTTGATATGCATACATTATATGCCTATACCTATATTAAAGTACCT
GACAATATATGGCTTACAGCCCCAGCCCAGAAATTATATTTTAGCCCTCT
GCGCTTTAACAATA
CATGACXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXTCTGCTTAGCTCACTCATATTAGAT
GCAATAGAATGAATTGATACATCCCCCAAAAAATGACAAACCTAAAACAT
GCCATCCTTAAGTAGGAAGATTTTGAGTTCAAGGATCTCTTGGTTAAGTT
CAGAGACTTGGTATAAGAAAAAAAAATAACAAATCCTGTCATAAACTGAG
GATTCTTGAAGTTTTTGTTTAAATAGCTTATTGAATTGACATTAATTTGA
TATAAATAGGAAATCAGTTTAGAAAATGAATATGGTGGGACTGAGTGGTG
GGAGGACAGGACATCTTATAATCGACCTGCCGATGCTGGGAACTTTTCCT
GCTTGTTCTCTCATCCAACAGATAGAAATTTCATCATAAGCAATGTTGTT
TCCTTTACAGAAATTCCTTCAGTTCCAGGTTATTTCAGACAGTTACTGGA
TTGGATTGTCATATGATAAGAAAAAAAAGCAATGGGCATGGATTGACAAT
GGCCCATCTAAACTGTGAGTTTCTGATCCCTTCAGACTCTAACCCTCCCT
TGGGGATTGAGAGGGTCGTCTGCAAAGGCTTTTCTCCATTTCTCATGGTT
TTCCTCATTTTCTATGGAGCTCAGGCATAAGGACCAGTTGTATAAGGCAG
TTCCTGATAAAGTGTTACTA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no172_a04.b1 MSMg01no172_a04.b1 CHROMAT_FILE:
MSMg01no172_a04.b1 PHD_FILE: MSMg01no172_a04.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:42:22 2005
         (318 letters)



>mm_chr6_129766034_129766751
          Length = 718

 Score =  543 bits (281), Expect = e-159
 Identities = 305/313 (97%)
 Strand = Plus / Plus

                                                                       
Query: 4   ggaattctccaggcaggttccttacatccaggcataggtctatagacacgctcatgagcc 63
           |||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||||
Sbjct: 204 ggaattctccaggcaggttccttacatctaggcacaggtctatagacacgctcatgagcc 263

                                                                       
Query: 64  atgctctgagctcataggtattgattactgcattgcatgatgctcagctcagtctgtgac 123
           |||||||||||||||||||||||||||||||  |||||||||||||||||||||||||||
Sbjct: 264 atgctctgagctcataggtattgattactgcgctgcatgatgctcagctcagtctgtgac 323

                                                                       
Query: 124 aatcaatatgtgtcatttaacaaatgaatatttaacagcatatcttttgctagaattatt 183
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 324 aatcaatatgtgtcatttaacaaatgaatatttaacagcatatcttttgctagaattatt 383

                                                                       
Query: 184 ttcacgtgcatgtacatgtgtctgtgcattagcatgtgtctgtggttgtgatgtctgtga 243
           ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 384 ttcacgtgcatgtacatgtgtctgtgcatgagcatgtgtctgtggttgtgatgtctgtga 443

                                                                       
Query: 244 gaatgtatgccacatgtatgtatcttcccaaggaggccagaagaggatattgcatctgct 303
           ||||  |||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 444 gaatacatgccacatgtatgtatcttcccaaggaggacagaagaggatattgcatctgct 503

                        
Query: 304 gagctggagttat 316
           |||||||||||||
Sbjct: 504 gagctggagttat 516


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 16
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 318
Length of database: 718
Length adjustment: 9
Effective length of query: 309
Effective length of database: 709
Effective search space:   219081
Effective search space used:   219081
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)