BAC Information

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BAC

Clone NameMSMg01-173B06
Chromosome6 (Build37)
Map Location 110,942,200 - 110,942,513
singlet/doubletsinglet
Overlap geneGrm7
Upstream genenone
Downstream genenone
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-173B06.T7 (MSMg01no173_b06.b1)MSMg01-173B06.TJ (MSMg01no173_b06.g1)
ACCAG368795AG368796
length723725
length of high quality
(start - end)
318 (45 - 362)297 (77 - 373)
definitionCHROMAT_FILE: MSMg01no173_b06.b1 PHD_FILE: MSMg01no173_b06.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:43:41 2005CHROMAT_FILE: MSMg01no173_b06.g1 PHD_FILE: MSMg01no173_b06.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:43:41 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
CTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGA
ATTCATGGAACATTGTATCTAATGTGCACATAGACACAAAAAGAATTAAA
ATAAAGCAATCTCCAAAAGGTTGGGCCTGTGTAGAAGAAGTAGATCCCGG
ATGGTCTGCTTTTGAAGGTAGATCTTGTCCCAAGACTGATGAGTGTCCTC
TCCTACCTACCTACCATGTTTTCTAGTGGGATGTTCTTCTCCCATGATAT
TTCTACCAGGCCTCCAGTCCCAAGAGCAGTGTATCCTAACTTGAACCAAA
TCAATAAGTCAAAATGAACATTTTATCTTTGAGTTGATTGTCTCTGGAGG
TGTGTGGCCGTGGAACACAGCCTTGACTAGCCCAGGACAGGTTATTTGAA
GCCTAGCAATCTATGGCTTTGCTTCTTTTTGAAATAGGTACCACTGAACA
TTAACCATCGCCACACCATTCTACTGTAGTTTTTAAACTCTTTCCAAATC
TTGTCTATAACATTTTATTTGTTTCTCTTCAGCATGATATTAAATATTTC
TTTTGCAATTAATTTAATCCATTTGTGCAGATAATTTTTTCAGAACAGAG
AGTTCAAATAGAAGATGAGAGATTATTGATCCATGATGTCTGTGAACATA
GAATGCTATAAACATCCAATTTTCAAAACCTGGTAACTATGGGTTGTATA
AGGAACGTCGAGGAAGAACAGCC
CGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXATAGTTCTGAGCACTGCATATATT
TCATTACAGCTGCTAGACCTCTCTTTTTAGTTTCAAGTGTCAAGATCGCA
ATCTAAACCACCTCAGAGAAAATGAAAATATATTAAATCATATACCTGGA
AGGCCCAAGGGTTTCACTAACTTCAGGCATTTCTCGAGCCACAACTAAAA
AATAGTTTTTATATAACTATCTTTTACTTTATCACTTAGTTCTAATTTTT
TTCTCAACGAGCTTCACATTGAATGTATAATTCCACTATAAGGCATAAAG
TTGCTCATTATTATATTACAGCTTGTCCTCACTGTGTTGTGATATATATC
ATAATAAAATATCTGGTAGCAAGAAATGACATAGTCAGAAAAATGATTAA
GAATTTATTTAAAATTTCAAATACTTAAAAAATAAAAACAATTAAAATGT
CCATTTTCTATTTCCTATTTCTCCCTCCTAACTCTTCATAGTTTCCTCAA
CTATATGCCCTCTCTTTTTACTAATTAGTACTGCATGTGTATATGTATAT
GAGTACGTATATATGATATATGTGATGAAAATACATATACATATATATCC
TAAATATAACTTGTTTAGTCTATATAATGGTACATGTATGCATGTTTTCT
GGGTGGACTATTTAACACCAAACAN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no173_b06.b1 MSMg01no173_b06.b1 CHROMAT_FILE:
MSMg01no173_b06.b1 PHD_FILE: MSMg01no173_b06.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:43:41 2005
         (318 letters)



>mm_chr6_110941996_110942713
          Length = 718

 Score =  600 bits (310), Expect = e-176
 Identities = 313/314 (99%)
 Strand = Plus / Minus

                                                                       
Query: 5   gaattcatggaacattgtatctaatgtgcacatagacacaaaaagaattaaaataaagca 64
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 518 gaattcatggaacattgtatctaatgtgcacatagacacaaaaagaattaaaataaagca 459

                                                                       
Query: 65  atctccaaaaggttgggcctgtgtagaagaagtagatcccggatggtctgcttttgaagg 124
           |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 458 atctccaaaaggttgggcctgtgtagaagaagtagatcccagatggtctgcttttgaagg 399

                                                                       
Query: 125 tagatcttgtcccaagactgatgagtgtcctctcctacctacctaccatgttttctagtg 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 398 tagatcttgtcccaagactgatgagtgtcctctcctacctacctaccatgttttctagtg 339

                                                                       
Query: 185 ggatgttcttctcccatgatatttctaccaggcctccagtcccaagagcagtgtatccta 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 338 ggatgttcttctcccatgatatttctaccaggcctccagtcccaagagcagtgtatccta 279

                                                                       
Query: 245 acttgaaccaaatcaataagtcaaaatgaacattttatctttgagttgattgtctctgga 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 278 acttgaaccaaatcaataagtcaaaatgaacattttatctttgagttgattgtctctgga 219

                         
Query: 305 ggtgtgtggccgtg 318
           ||||||||||||||
Sbjct: 218 ggtgtgtggccgtg 205


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 16
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 318
Length of database: 718
Length adjustment: 9
Effective length of query: 309
Effective length of database: 709
Effective search space:   219081
Effective search space used:   219081
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)