BAC Information

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BAC

Clone NameMSMg01-173K07
Chromosome6 (Build37)
Map Location 121,421,381 - 121,511,271
singlet/doubletdoublet
Overlap geneIqsec3
Upstream geneIl17ra, Cecr6, Cecr5, 1700072O05Rik, Cecr2, Slc25a18, Atp6v1e1, Bcl2l13, Bid, Mical3, LOC100043793, Minpp1-ps, Pex26, Tuba8, Usp18, Slc6a13, Slc6a12
Downstream geneLOC100043486, A2m, EG640530, Mug1, Mug4, Mug2, Mug-ps1, Klrg1, LOC625931, M6pr, Phc1, 1700063H04Rik, LOC677375, 4933426K21Rik, EG667035, Mfap5, Aicda
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-173K07.T7 (MSMg01no173_k07.b1)MSMg01-173K07.TJ (MSMg01no173_k07.g1)
ACCAG369191AG369192
length721731
length of high quality
(start - end)
318 (34 - 351)287 (82 - 368)
definitionCHROMAT_FILE: MSMg01no173_k07.b1 PHD_FILE: MSMg01no173_k07.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:44:21 2005CHROMAT_FILE: MSMg01no173_k07.g1 PHD_FILE: MSMg01no173_k07.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:44:21 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(121,421,381 - 121,421,694)(121,511,073 - 121,511,271)
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCTAAGTGT
CTTCCCTCTATGGCTGCCCCCATGGTAGTGGGGTGGAATTGTTCCCTCTG
TTGGGGGAACCGGCTATATAATATCGTGGAAGAATGTTGCCTTTAGCTGA
GTTGTGGACATTGAGGAAAACCCAACTCTCTGGTTTTCAGACCAAGGGGG
GAAAAAAAAGACAGCCATAAAACTGAAAGACAAATAGGCCACGGAGGATT
TTTTTGGGTCTTGAATCAGATGCTTCAGGTCTATCAAGCCAGGTCATCCC
TGAGCTCCTGTGCTTCTGTCCAAACCTACCCTGTGATCAAGCATGCCTAC
TTCACCTTTTACACTCCACTTTGATGGGAGAGGAAAGTGAGGTAGGGGGC
AGAGAAGAGGTGAGCTTTTAAGTGATGCAGCCAGTCTTCACAAGTGTCTT
CCAGACATAAAGCACATGCAAATAGAGATGAGGCACTCGGTGGCTCTCCT
CACTTGCCCCTCCCACTCCTGTAGCATCACACCATGAAGGCCACTGCTAA
CCAGGCACTGATTGCCACGGGGCTGTTCTTCTCTCGTCTGTCTAATAAGA
AGCAATATTGACAGTATCTCCTGGTTCTTTCAATATCTAGCAGAAATCGC
TCCAGTCCCCTTTATCTCATCTTCTCACATTCCTATACCATGGATCTCAC
ATGTGTAAAATATATCTGACG
CCGATGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTCACTTGGCAGCTTAATTC
CTGTTCCCATTTCCTGATGCTGTTAACACCACAGCACTGTTAGGCCACAG
ACGTTCAGCTCCTAGATTTTACACAACCTCATCTGTGAATATGTGGTTGA
TGAAGTAGAGCTCATGTGTAGAATTGTGCAGCAGCGCCACCAACAGGTTG
TAAAATGTTCCTGTCTCTCAGTGAAATTCTTTTTTTTTTTTGATTCTTTT
TTTTTCTTTCCATTTTTTATTAGGTATTTAGCTCATTTACATTTCCAATG
CTATACCAAAAGTCCCTTTTTATCCACCCACCCCCACTCCCCTACCCGCC
CACTCCCCCTTTTTGGCCCTGGCGTTCCCCTGATCAGAAGAAAATAAAGT
TTGTGTGTCCAATGGGCCTCTCTTTCCAGTGTTGGCCGACTAGGCCATCT
TTTGATATTTATGCCTCTAGAGTTTAGAGCTCCGGGGCACTGGCTAGGTT
ATAATGGTGATCCACCTATAGGTTTGCATATTCCCTTCAGCTCCTTGCCT
ACCTCCTTTAGCTTCTTCCCTGAGTACGCCCGTATCCCTTTCTATTATTT
TTGATGTTGGGCTTTCACTTTTTGTGTTTTTCTAGGTCCCTGCCTTATTC
CCCCATTACGATTGCTCTTTCTGTGTTTCTG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no173_k07.b1 MSMg01no173_k07.b1 CHROMAT_FILE:
MSMg01no173_k07.b1 PHD_FILE: MSMg01no173_k07.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:44:21 2005
         (318 letters)



>mm_chr6_121421177_121421894
          Length = 718

 Score =  561 bits (290), Expect = e-164
 Identities = 308/314 (98%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattctaagtgtcttccctctatggctgcccccatggtagtggggtggaattgttccct 64
           ||||||||||||||   |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattctaagtgtcaggcctctatggctgcccccatggtagtggggtggaattgttccct 264

                                                                       
Query: 65  ctgttgggggaaccggctatataatatcgtggaagaatgttgcctttagctgagttgtgg 124
           ||||||||||||  ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 ctgttgggggaaaaggctatataatatcgtggaagaatgttgcctttagctgagttgtgg 324

                                                                       
Query: 125 acattgaggaaaacccaactctctggttttcagaccaaggggggaaaaaaaagacagcca 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 acattgaggaaaacccaactctctggttttcagaccaaggggggaaaaaaaagacagcca 384

                                                                       
Query: 185 taaaactgaaagacaaataggccacggaggatttttttgggtcttgaatcagatgcttca 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 taaaactgaaagacaaataggccacggaggatttttttgggtcttgaatcagatgcttca 444

                                                                       
Query: 245 ggtctatcaagccaggtcatccctgagctcctgtgcttctgtccaaacctaccctgtgat 304
           ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 445 ggtctatcaagccaggtcatccctgagcttctgtgcttctgtccaaacctaccctgtgat 504

                         
Query: 305 caagcatgcctact 318
           ||||||||||||||
Sbjct: 505 caagcatgcctact 518


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 17
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 318
Length of database: 718
Length adjustment: 9
Effective length of query: 309
Effective length of database: 709
Effective search space:   219081
Effective search space used:   219081
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
Query= MSMg01no173_k07.g1 MSMg01no173_k07.g1 CHROMAT_FILE:
MSMg01no173_k07.g1 PHD_FILE: MSMg01no173_k07.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:44:21 2005
         (287 letters)



>mm_chr6_121510873_121511559
          Length = 687

 Score =  346 bits (179), Expect = e-100
 Identities = 194/199 (97%)
 Strand = Plus / Minus

                                                                       
Query: 1   tcacttggcagcttaattcctgttcccatttcctgatgctgttaacaccacagcactgtt 60
           ||||||||||||||||||||||||||||||||||||||||| ||| | ||||||||||||
Sbjct: 399 tcacttggcagcttaattcctgttcccatttcctgatgctgctaagaacacagcactgtt 340

                                                                       
Query: 61  aggccacagacgttcagctcctagattttacacaacctcatctgtgaatatgtggttgat 120
           | ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 339 aagccacagacgttcagctcctagattttacacaaactcatctgtgaatatgtggttgat 280

                                                                       
Query: 121 gaagtagagctcatgtgtagaattgtgcagcagcgccaccaacaggttgtaaaatgttcc 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 279 gaagtagagctcatgtgtagaattgtgcagcagcgccaccaacaggttgtaaaatgttcc 220

                              
Query: 181 tgtctctcagtgaaattct 199
           |||||||||||||||||||
Sbjct: 219 tgtctctcagtgaaattct 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 11
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 287
Length of database: 687
Length adjustment: 9
Effective length of query: 278
Effective length of database: 678
Effective search space:   188484
Effective search space used:   188484
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)