Query= MSMg01no173_l24.b1 MSMg01no173_l24.b1 CHROMAT_FILE:
MSMg01no173_l24.b1 PHD_FILE: MSMg01no173_l24.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:44:29 2005
(325 letters)
>mm_chr6_39683991_39684718
Length = 728
Score = 588 bits (304), Expect = e-172
Identities = 318/324 (98%), Gaps = 3/324 (0%)
Strand = Plus / Minus
Query: 5 gaattcttattacctgtgaactatgatgtaaaacaatccataccgaagtgtcagaaaata 64
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 528 gaattcttattacctgtgaactatgatgtaaaacaatccataccgaagtatcagaaaata 469
Query: 65 ctttgactttcaaccatacatgttcaaaaaaattaagaaaaaacaaaggattgattgata 124
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 468 ctttgactttcaaccatacatgttcaaaaaaattaagaaaaaacaaaggattgattgata 409
Query: 125 aggaattcaccttaggcattataactcaagaaggctatttaatagagtgatagtagtgac 184
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 408 aggaattcaccttaggcattataactcaagaaggctatttaatagagtaatagtagtgac 349
Query: 185 atacacagcagaaatgcc---cagagcattccttagaaactcgccagatttccataagtg 241
| |||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 348 acacacagcagaaatgcctgtcagagcattccttagaaactcgccagatttccataagtg 289
Query: 242 tgtatttgtataacttcttttgaaaatttcaaatgtacagaaatggtaaaaaggaaacag 301
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 288 tgtatttgtataacttcttttgaaaatttcaaatgtacagaaatggtaaaaaggaaacag 229
Query: 302 cagtataaagattgctatattctt 325
||||||||||||||||||||||||
Sbjct: 228 cagtataaagattgctatattctt 205
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 14
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 325
Length of database: 728
Length adjustment: 9
Effective length of query: 316
Effective length of database: 719
Effective search space: 227204
Effective search space used: 227204
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no173_l24.g1 MSMg01no173_l24.g1 CHROMAT_FILE:
MSMg01no173_l24.g1 PHD_FILE: MSMg01no173_l24.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:44:29 2005
(239 letters)
>mm_chr6_39537128_39537766
Length = 639
Score = 443 bits (229), Expect = e-129
Identities = 235/237 (99%)
Strand = Plus / Plus
Query: 1 cgtccgaggtcggagaagaactgctgtttctctgttccaggtaaagctggagagcaactt 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 cgtccgaggtcggagaagaactgctgtttctctgttccaggtaaagctggagagcaactt 260
Query: 61 cgcctccattgtggttgccatcatggtgctggaggggctcggccgctcactggaccccac 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 cgcctccattgtggttgccatcatggtgctggaggggctcggccgctcactggaccccac 320
Query: 121 gctggacatcctagaggcagcaaaacccttcctcttcaaagggccagcatcattcctgtg 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 gctggacatcctagaggcagcaaaacccttcctcttcaaagggccagcatcattcctgtg 380
Query: 181 acagtggcagtatgcacaaagtgaaggcagatcctcagggtctgccctttggcagct 237
||||||||||| |||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 381 acagtggcagtgtgcacacagtgaaggcagatcctcagggtctgccctttggcagct 437
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 11
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 239
Length of database: 639
Length adjustment: 9
Effective length of query: 230
Effective length of database: 630
Effective search space: 144900
Effective search space used: 144900
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
|
