BAC Information

Click to search

BAC

Clone NameMSMg01-173N07
Chromosome6 (Build37)
Map Location 93,753,843 - 93,754,153
singlet/doubletsinglet
Overlap geneMagi1
Upstream geneA730049H05Rik, LOC384461, LOC100043253, LOC665831
Downstream geneLOC100043262, LOC665856, Slc25a26, Lrig1, LOC625941
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-173N07.T7 (MSMg01no173_n07.b1)MSMg01-173N07.TJ (MSMg01no173_n07.g1)
ACCAG369322AG369323
length789729
length of high quality
(start - end)
320 (46 - 365)307 (382 - 688)
definitionCHROMAT_FILE: MSMg01no173_n07.b1 PHD_FILE: MSMg01no173_n07.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:44:34 2005CHROMAT_FILE: MSMg01no173_n07.g1 PHD_FILE: MSMg01no173_n07.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:44:34 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
CTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGG
AATTCTTGAATGAATGCATCTGTGAGTGAGTGAATGAGTTGATGAGTGAG
TGAGTACCCAGGTGGAGAAGTTCCCACATGTGTCTTTGGATGGCCAGTCT
TTGCCTATACGTCCTCACATAGAAAATTCTCTCAGACCAACCTGGTCTAC
AGAGTGAGTTCCAGGACAGCCAAGGCTATACAGAGAAACCCTGTCTCAAA
AAAACAAAAACAAGAAAGGAAGAAAGAAAGAAAGAAAGAGAGAGAGAGAG
AGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGGAAGGAAGGAAGGAAG
GAAGGAAGGAATTTTTGTTTTTTCCCCCCCCACCCCCCCCTTTTTTTTTT
TTTTTGGTTTTTTTTTTTTTTGNNCTCTTAAAAAAAAAAAAAAAATCCGC
GGGGGGGGGTGGTTTCTCTTTCTTTTCCCTTTCCCACTATTGCCCTTTCC
CTTAACCTCTTTTCCTTTACTTTATATCCCACAGCCTTTCTTTACCTTTT
TTTTTTCTGGCTTCCATTTCTATTTATCCCTCTCTTCCTTCCTCTTCTAT
CCCTCAAATTCTAACTTCTTCTCGACACCCCCCCTACCATAACTCCTTTT
TTATTCTCCAATCTTTCTTTTGTTACGCCCTATGTTCTCTGTTTTTTTCT
TTTTCCTTCTTATATCTCCTTTCTTATACCCCTTCTTTTTTCTTTCCCCT
TTATTGTATATTTCCCTTATGTCTCTCATCTTTCTCTCC
CGATGACXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXATACATTGGAGCTAGAGAGATGGC
TCAATGGTTAAGAGCAATTACTCTTCTTATAGAGATCCTGAGTTAAGTTT
CCAGCATCTGTGTTATGCAGCTCACAATGGCCCATGACTCCAGTTCTAGG
GAGATCTGATGTCTTTGATCCTTTTGGGCATAGACAGACAGACAGACAGA
CAGACAGACAGACACACACACACACACACACACACAAAATATTAACAAGA
ATAACTGATAATTTTTTAAAGTTGAATTTTTAAATTAATCATGCAGCTGC
TGGCCACTGTATTTATTTCACTCCCCCCCCGAATAAAATCTTCAGGGAGA
ATTAAAAGTCCCATAGAAGAACCCCTTTCTCCTCAGTTGCCAATTTTGTA
TAGCAAAGACATCTTGAGCTGAATTTGGCTCCCCAGAATCCTTGTCAAGC
TTAATTAATGCAGTAACACAAATCCACATAAACGCTGGACACTGTAGTGC
GTGTATCAGTGAGAGGGAAGACAAAGATGAGAGAACCGGTGGAGGAAGCT
TGTGGGCCAGCTAACCCAGAGTATACAGTGGTGACTACAATAGAGACCCT
GTTTCAAAACAAGCTGGAAGGCAAGAACTAACAACCACCCATGCATAGTC
CTGGGCCATAGGATGCATGGTCATGAACN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no173_n07.g1 MSMg01no173_n07.g1 CHROMAT_FILE:
MSMg01no173_n07.g1 PHD_FILE: MSMg01no173_n07.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:44:34 2005
         (307 letters)



>mm_chr6_93753643_93754353
          Length = 711

 Score =  536 bits (277), Expect = e-157
 Identities = 301/311 (96%), Gaps = 4/311 (1%)
 Strand = Plus / Minus

                                                                       
Query: 1   aataaaatcttcagggagaattaaaagtcccatagaagaacccctttctcctcagttgcc 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 511 aataaaatcttcagggagaattaaaagtcccatagaagaacccctttctcctcagttgcc 452

                                                                       
Query: 61  aattttgtatagc----aaagacatcttgagctgaatttggctccccagaatccttgtca 116
           |||||||||||||    |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 451 aattttgtatagcaaagaaagacatcttgagctgaatttggctccccagaatccttgtca 392

                                                                       
Query: 117 agcttaattaatgcagtaacacaaatccacataaacgctggacactgtagtgcgtgtatc 176
           ||||||||||||||||||||||||||||||||||| |||||||||||||||| |||||||
Sbjct: 391 agcttaattaatgcagtaacacaaatccacataaatgctggacactgtagtgtgtgtatc 332

                                                                       
Query: 177 agtgagagggaagacaaagatgagagaaccggtggaggaagcttgtgggccagctaaccc 236
           |||||||||||||||||| ||||||||||||| |||||||||||||||||||||||||||
Sbjct: 331 agtgagagggaagacaaacatgagagaaccggaggaggaagcttgtgggccagctaaccc 272

                                                                       
Query: 237 agagtatacagtggtgactacaatagagaccctgtttcaaaacaagctggaaggcaagaa 296
           ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
Sbjct: 271 agagtatacagtggtgactacgatagagaccctgtttcaaaacaagctggaaggcaagga 212

                      
Query: 297 ctaacaaccac 307
           |||||||||||
Sbjct: 211 ctaacaaccac 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 11
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 307
Length of database: 711
Length adjustment: 9
Effective length of query: 298
Effective length of database: 702
Effective search space:   209196
Effective search space used:   209196
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)