BAC Information

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BAC

Clone NameMSMg01-173O14
Chromosome6 (Build37)
Map Location 126,005,801 - 126,151,172
singlet/doubletdoublet
Overlap geneNtf3, LOC100043565
Upstream geneAcrbp, Gpr92, Chd4, Nol1, A930037G23Rik, Gapdh, Ncapd2, Mrpl51, Vamp1, Tapbpl, Cd27, 4930417O13Rik, Tuba3a, Ltbr, Scnn1a, Tnfrsf1a, Plekhg6, Cd9, Vwf, Tmem16b
Downstream geneLOC667427, LOC100043567, Kcna5, Kcna1, Kcna6, LOC667463, Ndufa9, Akap3, Dyrk4, Rad51ap1, D6Wsu163e, LOC667473, LOC624256, Fgf6, Fgf23, 9630033F20Rik, Ccnd2, Tpi-rs11
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-173O14.T7 (MSMg01no173_o14.b1)MSMg01-173O14.TJ (MSMg01no173_o14.g1)
ACCAG369375AG369376
length715715
length of high quality
(start - end)
318 (46 - 363)287 (73 - 359)
definitionCHROMAT_FILE: MSMg01no173_o14.b1 PHD_FILE: MSMg01no173_o14.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:44:40 2005CHROMAT_FILE: MSMg01no173_o14.g1 PHD_FILE: MSMg01no173_o14.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:44:40 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(126,150,863 - 126,151,172)(126,005,801 - 126,006,083)
sequence
CTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGG
AATTCAGCACTAACTTAAGGCATCTGAAATGGAGCTGATGGGTTTCTTTG
ACTGACCACAGACTCTCTCTCACCCCAGCTGTAGAACTGGACCAGAGATA
TGTCCATCCTCCATGCAGGCAGCTCTTCATACTAAACCATACATAGCTTT
TGGAAACAATGTCTGCTGTCCTCTGATGAGCAGTTCAGCCAACTCTTTGC
ACCAAACTACCAGGGACGGCGGCCACACCCACCCTCCTTACAAAACACCA
TTTTGCCAGCAGCCATCATTGTTCCTAACTAACAGGTGATACAACTTCCA
ACTTCCCTGTTTGTTTAAGACCACCCCCACACCTGCCATTTTGTCAAACC
TGGGAGCATATTTTCAGGACTGCATGAATCTGTGTTTCCCAGATTGCAAT
CCTAATTAGTCCCAAATACATATAATTTTGCTTGTGTTCAATTAGATTGA
TTTTATTTTGACAAGGTAGATTTAAGAGAGTCTTGAATAACTGCAAAGAA
CTGTCAGTATTTCGGCCATTGGTATATTGTATCTTCTGTTTGTATCCTGA
TGATAAAAGTAAGCATTTAGGGACTGTCTTCCAGTTACGTTGTATGCTTT
TGGATGCAAGGTCTTAGATTTGCTTTTGTGCAATTGGGGCTCTATAGAGA
TTCTAGAATATATTT
CGATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXTTGGGAAGGTATGAACTAGGTCTAGTGG
TATGGTGGTGTTGAGTAGGGACAAGGGAGGTAACTTCTCTGCCCAAGACT
GGAGAACATCAGAGTCTCCTTGAAGACATCTGTTCCTCTGACTTCAGGTA
TACCCTGGGACTCAGAGGTGTATGCAATAAAGATATGGTCCATCCTAGCA
GGAAATATACAGGAAGGAACATTGCACAGCTTTGGAAATGGGCTTAGGAC
TTTAGAGTAAAAAGTGGCGGGGTCCTGAGTATATGCCAAATGGTCTCAAA
GTGTATATTTGTCTTGTCTCGCCCCCCACCTTCTCTTCATCAAGACTGTT
GCATGGGTATAAGAAGGCTCCAGAGCTAAATAGACACCATTCTCCTCCAC
AGGAAAGAAGGAGTAAAGTGGAGGTAAGATAGGAGATCCAGGCCTGGGGA
GATGATATCTCTCTCAGTAAAGTGCTTCTAAGCAAGCATGAGGACTCTAC
CTCTACCTCAGCTCTCCAGCCCTCAAGAGAAAAGCTGTTACCTAGTGCGG
AGGATGCATACCGGTCAATGAGGTCTCACTTCAGTGAGAGAACCTCTCTC
AAAAATTAAGGTAAAAGATTCCACAAGACGGGTTATTTGTTGAACGTGCT
TGCCCCTTACGTCCA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no173_o14.b1 MSMg01no173_o14.b1 CHROMAT_FILE:
MSMg01no173_o14.b1 PHD_FILE: MSMg01no173_o14.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:44:40 2005
         (318 letters)



>mm_chr6_126150659_126151376
          Length = 718

 Score =  584 bits (302), Expect = e-171
 Identities = 308/310 (99%)
 Strand = Plus / Minus

                                                                       
Query: 5   gaattcagcactaacttaaggcatctgaaatggagctgatgggtttctttgactgaccac 64
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 514 gaattcagcactaacttaaggcatctgaaatggagctgatgggtttctttgactgaccac 455

                                                                       
Query: 65  agactctctctcaccccagctgtagaactggaccagagatatgtccatcctccatgcagg 124
           |||||||||| || ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 454 agactctctcacagcccagctgtagaactggaccagagatatgtccatcctccatgcagg 395

                                                                       
Query: 125 cagctcttcatactaaaccatacatagcttttggaaacaatgtctgctgtcctctgatga 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 394 cagctcttcatactaaaccatacatagcttttggaaacaatgtctgctgtcctctgatga 335

                                                                       
Query: 185 gcagttcagccaactctttgcaccaaactaccagggacggcggccacacccaccctcctt 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 334 gcagttcagccaactctttgcaccaaactaccagggacggcggccacacccaccctcctt 275

                                                                       
Query: 245 acaaaacaccattttgccagcagccatcattgttcctaactaacaggtgatacaacttcc 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 274 acaaaacaccattttgccagcagccatcattgttcctaactaacaggtgatacaacttcc 215

                     
Query: 305 aacttccctg 314
           ||||||||||
Sbjct: 214 aacttccctg 205


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 14
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 318
Length of database: 718
Length adjustment: 9
Effective length of query: 309
Effective length of database: 709
Effective search space:   219081
Effective search space used:   219081
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
Query= MSMg01no173_o14.g1 MSMg01no173_o14.g1 CHROMAT_FILE:
MSMg01no173_o14.g1 PHD_FILE: MSMg01no173_o14.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:44:40 2005
         (287 letters)



>mm_chr6_126005601_126006287
          Length = 687

 Score =  547 bits (283), Expect = e-160
 Identities = 283/283 (100%)
 Strand = Plus / Plus

                                                                       
Query: 1   ttgggaaggtatgaactaggtctagtggtatggtggtgttgagtagggacaagggaggta 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 ttgggaaggtatgaactaggtctagtggtatggtggtgttgagtagggacaagggaggta 260

                                                                       
Query: 61  acttctctgcccaagactggagaacatcagagtctccttgaagacatctgttcctctgac 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 acttctctgcccaagactggagaacatcagagtctccttgaagacatctgttcctctgac 320

                                                                       
Query: 121 ttcaggtataccctgggactcagaggtgtatgcaataaagatatggtccatcctagcagg 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 ttcaggtataccctgggactcagaggtgtatgcaataaagatatggtccatcctagcagg 380

                                                                       
Query: 181 aaatatacaggaaggaacattgcacagctttggaaatgggcttaggactttagagtaaaa 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 aaatatacaggaaggaacattgcacagctttggaaatgggcttaggactttagagtaaaa 440

                                                      
Query: 241 agtggcggggtcctgagtatatgccaaatggtctcaaagtgta 283
           |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 agtggcggggtcctgagtatatgccaaatggtctcaaagtgta 483


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 287
Length of database: 687
Length adjustment: 9
Effective length of query: 278
Effective length of database: 678
Effective search space:   188484
Effective search space used:   188484
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)