BAC Information

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BAC

Clone NameMSMg01-174F15
Chromosome6 (Build37)
Map Location 141,501,543 - 141,628,880
singlet/doubletdoublet
Overlap geneSlco1c1, Slco1b2
Upstream genePlekha5, Aebp2, EG664868, LOC664875, Pde3a
Downstream geneEG435927, Slco1a4, LOC100042750, EG664913, Slco1a1, EG625716, Slco1a6, Slco1a5, Iapp, BC027061, Recql, Golt1b, B230216G23Rik, Gys2, Ldhb, Kcnj8, Abcc9, 5330439B14Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-174F15.T7 (MSMg01no174_f15.b1)MSMg01-174F15.TJ (MSMg01no174_f15.g1)
ACCAG369674AG369675
length727735
length of high quality
(start - end)		315 (46 - 360)635 (72 - 706)
definitionCHROMAT_FILE: MSMg01no174_f15.b1 PHD_FILE: MSMg01no174_f15.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:45:12 2005CHROMAT_FILE: MSMg01no174_f15.g1 PHD_FILE: MSMg01no174_f15.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:45:12 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(141,501,543 - 141,501,853)(141,628,277 - 141,628,880)
sequence
CTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGG
AATTCTACCAGTGAGCAGCAGCTCCGATACCTCCAGCATTTCACTAAACT
GCTCAGATTGTCCTTCAATGTCTTTACAGCCTCCTCAGGCCTCATAACCT
CCCTGAATCTGCCTCCTGCATGGTTGGATCTCAAGCTTTTATCCCAGGCC
TGGTCTTTCTCTCATACAGAGGATACACACACCCTACATTATTTTCATCT
TTGCCAATTCAATAGAAATGAATTGAATGCTTTTGTGTTAGATTTTGTGC
TAAGAGTCAATCATGAATAGCATCATTCCACCACCTCAACACCATTTCAG
GCACAACATCTCTTTATCACACACCCCGCCCCATGACAATATGAGACCAC
AAGTGGGAAAGTCCACACCTGGCCTTGAGAGATTGCACTCATTTAGAATA
AAGACACACTGAAGACATTGTATAAAATTACCTGCAGACTCTGTTATTAT
TTTATGTATATGATCCATAAAATTAAATTTTTGTCAAGACATGGGTCACA
TCTCTGGGACCATATGTTATGTATGTATTCTCTAAAATTTTTCAAAATTC
AAAACAACAATAGTTGTAAGTATTTAAATAAGGAATACTCAGGCAGACGT
GGGCGGTTATTATAAGAAATTAAGCAGGTTTGGGGGCATTTAGAAAATTC
CTTGCAGTTGTACAGCTTGTTAAGTGG

TGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXATTTGATCTTTCTTCATTTAGTGAGCTGG
TGGCACCCTTACTTCTGTAACAACTCTCATCCATAATGATGAGAATGAAA
TTACATGGAAAAGTGGATGGGTGGGATATTACTCCTGCTTGAATACTTTT
ACTGAAATACTAAACTGATGATATATTTTACATTGCCTTAAACTACTTGG
TGCTTATTTGTTTAGAAGGCTGAGTAGATATGTCATTCTGCCAAGGGGAA
GAAACCACTTCACCTCTCCTGACAAAAGAGAACAGTTCTTCACTTCAAGT
TTTGTGAGGATCCAATATATATGTATTTGCACCTTGAACTTCAGTTTTCT
TGAAATGTGACTGATCCTTAATCCTTGCAGGAAAGATACCACCTACTGAG
GACTTTCAACCATGTCCTAGAATGCTGGTGGCTCCCTCTCAACCTCAGGG
ATTATGGAGGCTAAGACAAGCAGATCACTTGAGTAGTATAGTGTATGACT
TACCTGGGCAACATAGTGAAACCGTGTCTCAAAAAAAATCAATGAATAAA
TAAATGAATAAAGTTATCAAGAGAGCTTATACAATTAAACAGAGAACACA
TTAAACACATTACAATAAAGATTTCAAGCATTGTGGTTATATGTTAGGAG
ACAGTAGATGCAGTATGGTTGGTGAAGGGTGGTCT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no174_f15.b1 MSMg01no174_f15.b1 CHROMAT_FILE:
MSMg01no174_f15.b1 PHD_FILE: MSMg01no174_f15.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:45:12 2005
         (315 letters)



>mm_chr6_141501339_141502053
          Length = 715

 Score =  601 bits (311), Expect = e-176
 Identities = 311/311 (100%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattctaccagtgagcagcagctccgatacctccagcatttcactaaactgctcagatt 64
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattctaccagtgagcagcagctccgatacctccagcatttcactaaactgctcagatt 264

                                                                       
Query: 65  gtccttcaatgtctttacagcctcctcaggcctcataacctccctgaatctgcctcctgc 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 gtccttcaatgtctttacagcctcctcaggcctcataacctccctgaatctgcctcctgc 324

                                                                       
Query: 125 atggttggatctcaagcttttatcccaggcctggtctttctctcatacagaggatacaca 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 atggttggatctcaagcttttatcccaggcctggtctttctctcatacagaggatacaca 384

                                                                       
Query: 185 caccctacattattttcatctttgccaattcaatagaaatgaattgaatgcttttgtgtt 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 caccctacattattttcatctttgccaattcaatagaaatgaattgaatgcttttgtgtt 444

                                                                       
Query: 245 agattttgtgctaagagtcaatcatgaatagcatcattccaccacctcaacaccatttca 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 agattttgtgctaagagtcaatcatgaatagcatcattccaccacctcaacaccatttca 504

                      
Query: 305 ggcacaacatc 315
           |||||||||||
Sbjct: 505 ggcacaacatc 515


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 15
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 315
Length of database: 715
Length adjustment: 9
Effective length of query: 306
Effective length of database: 706
Effective search space:   216036
Effective search space used:   216036
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no174_f15.g1 MSMg01no174_f15.g1 CHROMAT_FILE:
MSMg01no174_f15.g1 PHD_FILE: MSMg01no174_f15.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:45:12 2005
         (635 letters)



>mm_chr6_141628277_141629311
          Length = 1035

 Score = 1160 bits (600), Expect = 0.0
 Identities = 603/604 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   atttgatctttcttcatttagtgagctggtggcacccttacttctgtaacaactctcatc 60
           ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 604 atttgatctttcttcatttagtgagctggtggcacccttacttctgtaaaaactctcatc 545

                                                                       
Query: 61  cataatgatgagaatgaaattacatggaaaagtggatgggtgggatattactcctgcttg 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 544 cataatgatgagaatgaaattacatggaaaagtggatgggtgggatattactcctgcttg 485

                                                                       
Query: 121 aatacttttactgaaatactaaactgatgatatattttacattgccttaaactacttggt 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 484 aatacttttactgaaatactaaactgatgatatattttacattgccttaaactacttggt 425

                                                                       
Query: 181 gcttatttgtttagaaggctgagtagatatgtcattctgccaaggggaagaaaccacttc 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 424 gcttatttgtttagaaggctgagtagatatgtcattctgccaaggggaagaaaccacttc 365

                                                                       
Query: 241 acctctcctgacaaaagagaacagttcttcacttcaagttttgtgaggatccaatatata 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 364 acctctcctgacaaaagagaacagttcttcacttcaagttttgtgaggatccaatatata 305

                                                                       
Query: 301 tgtatttgcaccttgaacttcagttttcttgaaatgtgactgatccttaatccttgcagg 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 304 tgtatttgcaccttgaacttcagttttcttgaaatgtgactgatccttaatccttgcagg 245

                                                                       
Query: 361 aaagataccacctactgaggactttcaaccatgtcctagaatgctggtggctccctctca 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 244 aaagataccacctactgaggactttcaaccatgtcctagaatgctggtggctccctctca 185

                                                                       
Query: 421 acctcagggattatggaggctaagacaagcagatcacttgagtagtatagtgtatgactt 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 184 acctcagggattatggaggctaagacaagcagatcacttgagtagtatagtgtatgactt 125

                                                                       
Query: 481 acctgggcaacatagtgaaaccgtgtctcaaaaaaaatcaatgaataaataaatgaataa 540
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 124 acctgggcaacatagtgaaaccgtgtctcaaaaaaaatcaatgaataaataaatgaataa 65

                                                                       
Query: 541 agttatcaagagagcttatacaattaaacagagaacacattaaacacattacaataaaga 600
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 64  agttatcaagagagcttatacaattaaacagagaacacattaaacacattacaataaaga 5

               
Query: 601 tttc 604
           ||||
Sbjct: 4   tttc 1


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 31
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 635
Length of database: 1035
Length adjustment: 10
Effective length of query: 625
Effective length of database: 1025
Effective search space:   640625
Effective search space used:   640625
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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