BAC Information

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BAC

Clone NameMSMg01-174G10
Chromosome6 (Build37)
Map Location 110,888,408 - 110,888,680
singlet/doubletsinglet
Overlap geneGrm7
Upstream genenone
Downstream genenone
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-174G10.T7 (MSMg01no174_g10.b1)MSMg01-174G10.TJ (MSMg01no174_g10.g1)
ACCAG369708AG369709
length720746
length of high quality
(start - end)
277 (23 - 299)291 (76 - 366)
definitionCHROMAT_FILE: MSMg01no174_g10.b1 PHD_FILE: MSMg01no174_g10.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:45:15 2005CHROMAT_FILE: MSMg01no174_g10.g1 PHD_FILE: MSMg01no174_g10.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:45:15 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
XXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCACTCATCTCAATTGATCC
ATTCTAGGAAATCTCTCATTGATAAACCCTGTCTAGCTTATATTCTAGAG
ATATAGTCTAGATCTTCTCATGCTGTCTACATTAACCATTACAATATTTT
TACCTGAGCTTTTATTCAAATAAATCTCTCTTTCCTACCTACAAGGGACT
TCTCCGTACAAGAACAGTATCTAAATGGACTCCTTACTTCCTTCTGGGCA
TGAAAGTAAAGCAGTATCAGAAGTTTCCTCTGGCTTCCTTCCTCTAGAAT
GTACAGTCTCAGTGCTAGCTTTTTATAAGCACAGAGTTCTTTTATTACAC
CCCCCCCCCCTCTGTGTGGNAGTCTGAGTGTTTGGTCTGTGAGACACCCT
GGTATGATTTGGCGACAATTCTGATTCATATAATTGCGACAGCACCTATT
CACTATAGACCACACAGGAGGACATGCCAAGCACATAACATGCTGCTGGA
CCAGGGTTATGCGCAGTCAAGCCAGTTTCACAATTTATAGTACTCTTTTC
ACAGCTTCCCCTAGGAACGATATGTTGACTATTCCAAACTCTCATGTATA
ATAGACTTTCATCTCTCTTAGCATTTATAGGTTAGCCCTATTCCTCCCAC
ATAAATCATGATGACCAAGATGTTTTTCCAAGTTCTCTTTTCTACCACCT
GATCCTACCATCTTCTTTTG
CGATGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXTCACCTGAGGAATACCGAATGGCAG
AGAAGCACCTGAAAAAAATGTTCAACAACCTTAATCATTAGGGAAATGCA
AATCAAAACAACCCCGAGATTCCACCTCACACCAGTCAGAATGGCTAAGA
TCAAAAATTCAGGTGTCAGCAGATGCTGGCGAGGATGTGGAGAAAGAGGA
ACACTCCTCCACTGTTGGTGGGATTGCAAGCTTGTACAACCACTCTGGAA
ATCAGTCTGGCAGTTTCTCAGAAAATTGGACATGGTACTACCGGAGGATC
ACGCAATACCTCTCTTGTTTTTATCTCCCCCCCCATGTTCTAATTAGTAA
GAAAGAAATATACTACTATGCTCATAGCAGACTTATTTATAATAGTCAGA
AGCTGGAAACAACCCAGATGCCCCTAAACAGAGGAATGGATACAAAAATG
TGGCACATTTACACAATGGAGCACTACTCAGCTATTAAAAAGAATGAATT
TATGAAATTCCTAGGCCAATGGATGCCCCAGGAGAATATCATCCTGAATG
AGGTAATTGCATTACAAAATAACACACATAATATGTTCTCTCAGATAAGT
GTATATCACCCCTGACTTTTACAATACCCCCCATATAACACACTATTTGT
TAAACATTTGAATCTCATGAAGAAGGATGACCTTTGTGCGCACACN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no174_g10.b1 MSMg01no174_g10.b1 CHROMAT_FILE:
MSMg01no174_g10.b1 PHD_FILE: MSMg01no174_g10.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:45:15 2005
         (277 letters)



>mm_chr6_110888204_110888880
          Length = 677

 Score =  513 bits (265), Expect = e-150
 Identities = 271/273 (99%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattcactcatctcaattgatccattctaggaaatctctcattgataaaccctgtctag 64
           |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 205 gaattcactcatctcaattgatccattctaggaaatctttcattgataaaccctgtctag 264

                                                                       
Query: 65  cttatattctagagatatagtctagatcttctcatgctgtctacattaaccattacaata 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 cttatattctagagatatagtctagatcttctcatgctgtctacattaaccattacaata 324

                                                                       
Query: 125 tttttacctgagcttttattcaaataaatctctctttcctacctacaagggacttctccg 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 tttttacctgagcttttattcaaataaatctctctttcctacctacaagggacttctccg 384

                                                                       
Query: 185 tacaagaacagtatctaaatggactccttacttccttctgggcatgaaagtaaagcagta 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 tacaagaacagtatctaaatggactccttacttccttctgggcatgaaagtaaagcagta 444

                                            
Query: 245 tcagaagtttcctctggcttccttcctctagaa 277
           |||||||||||||||||||||| ||||||||||
Sbjct: 445 tcagaagtttcctctggcttccatcctctagaa 477


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 12
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 277
Length of database: 677
Length adjustment: 9
Effective length of query: 268
Effective length of database: 668
Effective search space:   179024
Effective search space used:   179024
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)