BAC Information

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BAC

Clone NameMSMg01-174G13
Chromosome6 (Build37)
Map Location 33,517,695 - 33,661,891
singlet/doubletdoublet
Overlap geneExoc4
Upstream genePlxna4, Chchd3, LOC100039118, Gm1401
Downstream geneLrguk, Slc35b4, Akr1b3, Akr1b8, LOC664942, 2310005E10Rik, Akr1b7, Bpgm, LOC100039184, Cald1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-174G13.T7 (MSMg01no174_g13.b1)MSMg01-174G13.TJ (MSMg01no174_g13.g1)
ACCAG369714AG369715
length731736
length of high quality
(start - end)
315 (46 - 360)286 (77 - 362)
definitionCHROMAT_FILE: MSMg01no174_g13.b1 PHD_FILE: MSMg01no174_g13.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:45:16 2005CHROMAT_FILE: MSMg01no174_g13.g1 PHD_FILE: MSMg01no174_g13.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:45:16 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(33,661,583 - 33,661,891)(33,517,695 - 33,517,980)
sequence
CTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGG
AATTCCGGGGTTGGGAATCAGATTAGCATTCTAATTAGTGTTACTGGCTA
AAAGACCAAATTGGAGTTTTTATACTGGGGTACAGTTAGTGTGGATAGAT
GGAATTAAACAAAACAGCATAGAAAAGTCAGGGTATGTTTTCACAGTTAG
ATATATGTCCAGTTTTGGTTATGGGCCCGTTTTTCTAACAAAATAAAGTA
ATGAATAAGTATTCATTAAGTAAACAGAAGGCCCTAGAGAAAACAGAGCA
AGTATAAAGTTGTCAGACAGACTCTCCTCAATAGACATATCTGTTTCCAT
CTTCCCTCTTTTTTTTAACCCAAGGCGGCCCTGAGAAATCCCAGCACCAA
GGGTCTAAAGAGAAACTTTCACCTGAGAACTAATCAGTTCTAATGGTTGC
TGATGATTTGGCCATGCTGAGGCATACTGGGGAATGTTGGAAGGTAGATC
CACTGGGGATTATCGGAAAGAAAATCAAGTTGTTAAACTTTATCCAGAGG
ATGAAAACAATTATATTCTTAATTGTGCTATGATCTTCACTTAAACAGTC
ACTTGCTGCCACAGCCAATAAAACTGATTATTTATACAGCGACTATTTAT
AATCTGCTTATCAAAATATTAGTTAAGTGACTTCTATCTTTGAAATTCCA
ATCTGGGTTGTATATTAGATCTTCCATAATA
CGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXCAGAAGATAACCTTGGTTGTTGTT
TTCTCTGTACATCCTGATTTCCCACAGTTACACAGCAAACATTGTACCAA
CTGAGTTGTCTCCCTAGGTTCAAAACTGTAATTCGAGGAAATTTGTGAAA
TTTGCTGTCTACAGTGACTGGAAAGTTGACTTGCTAATTGCACGATGTAG
TTACTGTGGGTTTTCAGGTACTGTTCTTTAAAGCCACCTGTCCCTCTGTG
ATGCAGATGCTTCCAGTGAGCTGTGGTACTGCTCCTGCTCTGTGGCTGCC
AGTTCTGATTATTTTCTTCAGCAACCTCACCCATGCTGTTATGCAACTGT
ATTTTGATTCTTAAAATTTTTTTTTTGAAAGAACTCACTATCTGTCCTTT
TTCTCTCAGTCACGTAAGGCCATTATTCTTCATACCTGTCATGTTGATTT
CTTCACATTAATTTCCTTCCAACTTAGGAAGTAAGAATATTCGAGTGTTT
CTTTGAGTACTAAGCCAATGGAAGCATTTTCTAGCACAAAAGCTTCCATC
GGAACTGGAATTCATGCAGTTCTCAGTCCCAATGAACTACTTTGTAGATG
ACTTCACAGGCCAAGCCTGATGGTCACCTTTTGTTTTCTATGTGTTGGTT
TTCCTTGTCATAAAAATCCAGTATAGTCTGTGGCTG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no174_g13.b1 MSMg01no174_g13.b1 CHROMAT_FILE:
MSMg01no174_g13.b1 PHD_FILE: MSMg01no174_g13.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:45:16 2005
         (315 letters)



>mm_chr6_33661379_33662093
          Length = 715

 Score =  598 bits (309), Expect = e-175
 Identities = 309/309 (100%)
 Strand = Plus / Minus

                                                                       
Query: 5   gaattccggggttgggaatcagattagcattctaattagtgttactggctaaaagaccaa 64
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 513 gaattccggggttgggaatcagattagcattctaattagtgttactggctaaaagaccaa 454

                                                                       
Query: 65  attggagtttttatactggggtacagttagtgtggatagatggaattaaacaaaacagca 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 453 attggagtttttatactggggtacagttagtgtggatagatggaattaaacaaaacagca 394

                                                                       
Query: 125 tagaaaagtcagggtatgttttcacagttagatatatgtccagttttggttatgggcccg 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 393 tagaaaagtcagggtatgttttcacagttagatatatgtccagttttggttatgggcccg 334

                                                                       
Query: 185 tttttctaacaaaataaagtaatgaataagtattcattaagtaaacagaaggccctagag 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 333 tttttctaacaaaataaagtaatgaataagtattcattaagtaaacagaaggccctagag 274

                                                                       
Query: 245 aaaacagagcaagtataaagttgtcagacagactctcctcaatagacatatctgtttcca 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 273 aaaacagagcaagtataaagttgtcagacagactctcctcaatagacatatctgtttcca 214

                    
Query: 305 tcttccctc 313
           |||||||||
Sbjct: 213 tcttccctc 205


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 17
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 315
Length of database: 715
Length adjustment: 9
Effective length of query: 306
Effective length of database: 706
Effective search space:   216036
Effective search space used:   216036
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
Query= MSMg01no174_g13.g1 MSMg01no174_g13.g1 CHROMAT_FILE:
MSMg01no174_g13.g1 PHD_FILE: MSMg01no174_g13.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:45:16 2005
         (286 letters)



>mm_chr6_33517495_33518180
          Length = 686

 Score =  499 bits (258), Expect = e-146
 Identities = 279/286 (97%)
 Strand = Plus / Plus

                                                                       
Query: 1   cagaagataaccttggttgttgttttctctgtacatcctgatttcccacagttacacagc 60
           ||||||||||||||||||||||||||||||||||||||||| | |||| |||||||||||
Sbjct: 201 cagaagataaccttggttgttgttttctctgtacatcctgagtccccatagttacacagc 260

                                                                       
Query: 61  aaacattgtaccaactgagttgtctccctaggttcaaaactgtaattcgaggaaatttgt 120
           |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 261 aaacattgtaccaactgagttgtctccctaggttcaaaactgtaattccaggaaatttgt 320

                                                                       
Query: 121 gaaatttgctgtctacagtgactggaaagttgacttgctaattgcacgatgtagttactg 180
           |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 gaaatttgctgtctacagcgactggaaagttgacttgctaattgcacgatgtagttactg 380

                                                                       
Query: 181 tgggttttcaggtactgttctttaaagccacctgtccctctgtgatgcagatgcttccag 240
           ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 tgggttttcaggtactgttatttaaagccacctgtccctctgtgatgcagatgcttccag 440

                                                         
Query: 241 tgagctgtggtactgctcctgctctgtggctgccagttctgattat 286
           ||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 441 tgagctgtggtactgctcctgctctgtggatgccagttctgattat 486


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 10
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 286
Length of database: 686
Length adjustment: 9
Effective length of query: 277
Effective length of database: 677
Effective search space:   187529
Effective search space used:   187529
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)