BAC Information

Click to search

BAC

Clone NameMSMg01-174H05
Chromosome6 (Build37)
Map Location 64,103,739 - 64,104,050
singlet/doubletsinglet
Overlap geneGrid2
Upstream geneLOC667099
Downstream geneAtoh1, LOC100041833, LOC667115, Smarcad1, Ptgds2, LOC100042741
LinkOpen Mouse BAC browser

no map image available.



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-174H05.T7 (MSMg01no174_h05.b1)MSMg01-174H05.TJ (MSMg01no174_h05.g1)
ACCAG369744AG369745
length778698
length of high quality
(start - end)
316 (96 - 411)260 (439 - 698)
definitionCHROMAT_FILE: MSMg01no174_h05.b1 PHD_FILE: MSMg01no174_h05.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:45:19 2005CHROMAT_FILE: MSMg01no174_h05.g1 PHD_FILE: MSMg01no174_h05.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:45:19 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
TTTTGNTTTGTCGGGTTGGGGGGCTTACATATCTTCCACATTNNNNATTA
TCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGG
AATTCTCCTTGCTTTCCATAGTTCCCAATGGGGTTAAGTTCAGTTTTCTA
TAGCAACAGTGATTTCCTTGCAAATAATTGGGCGGGATGCTCCCTCATCC
CTCCCCTGCCCCTGACTTGCCTAAGCCTGTTAGTTGTCTTAGGACAAAAT
CACCTCTTTAATAATAAATTGCATGCACTTGAATTAGTATCTCAAAGTTA
TATCTATTCTTTCACCAATGTGTTTTATTTATGCCAGACTATAGTTTCTG
GGACATAATGAGTACTTAATGTAATTCCCCCATTAATTTCTCAGTTTTTA
AGCATAAGTGCATTTAATAAATGCCCCCATCAAACCTTATAGTATAATCC
TTGCATAAAGTAGACATGACACCACGTGTAAAAAATACATTCATGTGTAA
TGCTGCCAGTATTATTTTTATACAATAGTATATCTAATACATTAGTGCTG
ACCCGCGCACCAGTCGCTAATTGAATACCATTTTATTATGACTTTTTGAA
CCCCATTAACAACTTAGTCAATTTAACATAACTGTATTTTAACGGACCGG
ACTGTTACTAATTTGAGATAAAACCCTTGTGTGTTAGCAACGCCCCGATC
TAAATGTTTATATAGCAGAGCAAAATCTGTTGTGACCCCATTTTTACCAT
AATATATGTCATTTATTTTTTTCACAAA
NCCCCTACTCTATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTCATCTGAGGAAACC
TGAACAGCTGAGAAGAACCTAAAGATTTGTCAAACATCCTTAGTCATCAG
GGAAATACAAATCAAAACAATTCTGAGATTCCACCTCTCACCAGTCAGAA
TGGCTAAGATCAAAAACTCAGATAACAGCAGATGCTGTCAAGGATGTGGA
AAAAAGAGGAACACTCCTCCACTGCTTGTGGAATTGCAACCTGGTACAAC
CATTCACTGTGGCGGTTCCTCAGAAATTGGACATAAGATTACCTGAGGAC
CCAGCTATACCACTTCTGTGTATATATCCAAAAGATGTTCCAACATATAA
CAAGGATATGTATAACAAGGCCTTATTTATAAAGAACAGAAGCTGGAAAC
AACCCAGATGTCCTTCAACAGAAGAATGGATACAGAAAATGTGGTACATT
TACAAAATGGAGTACTACGCGCAGCTATTAAAAACAATGACTTCATGAAC
TTCTTAGGCAAATGGCTGGGTCTGGAGGATATCATCCTGAGAGACGTAAT
CCAGTCCCAAAAGAACACACAAGGTATGCACTCACTGATAAGTGGTTATT
AGCCCAAAATCTTGGAATAACTAAGATGCAATTTACAGACCACATGAA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no174_h05.b1 MSMg01no174_h05.b1 CHROMAT_FILE:
MSMg01no174_h05.b1 PHD_FILE: MSMg01no174_h05.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:45:19 2005
         (316 letters)



>mm_chr6_64103535_64104250
          Length = 716

 Score =  596 bits (308), Expect = e-175
 Identities = 311/312 (99%)
 Strand = Plus / Minus

                                                                       
Query: 5   gaattctccttgctttccatagttcccaatggggttaagttcagttttctatagcaacag 64
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 516 gaattctccttgctttccatagttcccaatggggttaagttcagttttctatagcaacag 457

                                                                       
Query: 65  tgatttccttgcaaataattgggcgggatgctccctcatccctcccctgcccctgacttg 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 456 tgatttccttgcaaataattgggcgggatgctccctcatccctcccctgcccctgacttg 397

                                                                       
Query: 125 cctaagcctgttagttgtcttaggacaaaatcacctctttaataataaattgcatgcact 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 396 cctaagcctgttagttgtcttaggacaaaatcacctctttaataataaattgcatgcact 337

                                                                       
Query: 185 tgaattagtatctcaaagttatatctattctttcaccaatgtgttttatttatgccagac 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 336 tgaattagtatctcaaagttatatctattctttcaccaatgtgttttatttatgccagac 277

                                                                       
Query: 245 tatagtttctgggacataatgagtacttaatgtaattcccccattaatttctcagttttt 304
           || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 276 taaagtttctgggacataatgagtacttaatgtaattcccccattaatttctcagttttt 217

                       
Query: 305 aagcataagtgc 316
           ||||||||||||
Sbjct: 216 aagcataagtgc 205


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 14
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 316
Length of database: 716
Length adjustment: 9
Effective length of query: 307
Effective length of database: 707
Effective search space:   217049
Effective search space used:   217049
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)