BAC Information

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BAC

Clone NameMSMg01-174I05
Chromosome6 (Build37)
Map Location 64,103,739 - 64,104,050
singlet/doubletsinglet
Overlap geneGrid2
Upstream geneLOC667099
Downstream geneAtoh1, LOC100041833, LOC667115, Smarcad1, Ptgds2, LOC100042741
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-174I05.T7 (MSMg01no174_i05.b1)MSMg01-174I05.TJ (MSMg01no174_i05.g1)
ACCAG369789AG369790
length723712
length of high quality
(start - end)
316 (46 - 361)291 (75 - 365)
definitionCHROMAT_FILE: MSMg01no174_i05.b1 PHD_FILE: MSMg01no174_i05.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:45:24 2005CHROMAT_FILE: MSMg01no174_i05.g1 PHD_FILE: MSMg01no174_i05.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:45:24 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
TCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGG
AATTCTCCTTGCTTTCCATAGTTCCCAATGGGGTTAAGTTCAGTTTTCTA
TAGCAACAGTGATTTCCTTGCAAATAATTGGGCGGGATGCTCCCTCATCC
CTCCCCTGCCCCTGACTTGCCTAAGCCTGTTAGTTGTCTTAGGACAAAAT
CACCTCTTTAATAATAAATTGCATGCACTTGAATTAGTATCTCAAAGTTA
TATCTATTCTTTCACCAATGTGTTTTATTTATGCCAGACTAAAGTTTCTG
GGACATAATGAGTACTTAATGTAATTCCCCCATTAATTTCTCAGTTTTTA
AGCATAAGTGCACATTACAATTCCCCCACTCACTTTTATAGCACAATCCT
TGCATAAAGTAGACATGAAATTATGTGTAAAGAATACATGAATGTGTAAT
GTTGCCAGCATTATTTTTATACAATAGTATATCTAATACATTAGTGTTGA
TTTGGGCACCAGTGGGAATTGAATAAAATTTTATTATGACATTATGAACA
TTATTAATAACAAAGTTAAATTAAAATAATTGTATTTTAACGGACTGGAC
TGGTATTACATTGAGATAGAAGCCTTGTGTGTTAGGAATGTAATGTTCTA
AATGTATACATAGTTGTGGTAGAACTGCTGTGAGCCCTTCCAACAAGATT
ACATGCCAAATCACACAGTAATA
CGATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXTCATCTGAGGAAACCTGAACAGCTGA
GAAGAACCTAAAGAAATGTTCAACATCCTTAGTCATCAGGGAAATACAAA
TCAAAACAATTCTGAGATTCCACCTCTCACCAGTCAGAATGGCTAAGATC
AAAAACTCAGATAACAGCAGATGCTGTCAAGGATGTGGAAAAAAGAGGAA
CACTCCTCCACTGCTTGTGGAATTGCAACCTGGTACAACCATTCACTGTG
GCGGTTCCTCAGAAATTGGACATAAGATTACCTGAGGACCCAGCTATACC
ACTTCTGTGCATATATCTTTTAGATGTCCCAACATATAACAAGGATATGT
ATAACAAGGCCTTATTTATAATGGCCAGAAGCTGGAAACAACCCAGATGT
CCTTCAACAGAAGAATGGATACAGAAAATGTGGTACATTTACAAAATGGA
GTACTACGCGCAGCTATTAAAAACAATGACTTCATGAACTTCTTAGGCAA
ATGGCTGGGTCTGGAGGATATCATCCTGAGAGACGTAATCCAGTCCCAAA
AGAACACACAAGGTATGCACTCACTGATAAGTGGTTATTAGCCCAAAATC
TTGGAATAACTAAGATGCAATTTACAGACCACATGAAGCTCATGAGAAAG
GAAGACCAAAGA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no174_i05.b1 MSMg01no174_i05.b1 CHROMAT_FILE:
MSMg01no174_i05.b1 PHD_FILE: MSMg01no174_i05.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:45:24 2005
         (316 letters)



>mm_chr6_64103535_64104250
          Length = 716

 Score =  603 bits (312), Expect = e-177
 Identities = 312/312 (100%)
 Strand = Plus / Minus

                                                                       
Query: 5   gaattctccttgctttccatagttcccaatggggttaagttcagttttctatagcaacag 64
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 516 gaattctccttgctttccatagttcccaatggggttaagttcagttttctatagcaacag 457

                                                                       
Query: 65  tgatttccttgcaaataattgggcgggatgctccctcatccctcccctgcccctgacttg 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 456 tgatttccttgcaaataattgggcgggatgctccctcatccctcccctgcccctgacttg 397

                                                                       
Query: 125 cctaagcctgttagttgtcttaggacaaaatcacctctttaataataaattgcatgcact 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 396 cctaagcctgttagttgtcttaggacaaaatcacctctttaataataaattgcatgcact 337

                                                                       
Query: 185 tgaattagtatctcaaagttatatctattctttcaccaatgtgttttatttatgccagac 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 336 tgaattagtatctcaaagttatatctattctttcaccaatgtgttttatttatgccagac 277

                                                                       
Query: 245 taaagtttctgggacataatgagtacttaatgtaattcccccattaatttctcagttttt 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 276 taaagtttctgggacataatgagtacttaatgtaattcccccattaatttctcagttttt 217

                       
Query: 305 aagcataagtgc 316
           ||||||||||||
Sbjct: 216 aagcataagtgc 205


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 15
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 316
Length of database: 716
Length adjustment: 9
Effective length of query: 307
Effective length of database: 707
Effective search space:   217049
Effective search space used:   217049
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)