Query= MSMg01no176_c24.b1 MSMg01no176_c24.b1 CHROMAT_FILE:
MSMg01no176_c24.b1 PHD_FILE: MSMg01no176_c24.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:47:38 2005
(607 letters)
>mm_chr6_5007766_5008772
Length = 1007
Score = 1104 bits (571), Expect = 0.0
Identities = 598/611 (97%), Gaps = 8/611 (1%)
Strand = Plus / Minus
Query: 1 ggtgtgtgccactatacccagcttaaatttttgtttatttatttattctatattgtgttt 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 807 ggtgtgtgccactatacccagcttaaatttttgtttatttatttattctatattgtgttt 748
Query: 61 ttatatgtttgtactcatgtccacacatatggaaaccagaggacatcttttagtaccatt 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 747 ttatatgtttgtactcatgtccacacatatggaaaccagaggacatcttttagtaccatt 688
Query: 121 gtactggcaccaatactttccattattaactcgggacctttcttgagaccctgtctcaaa 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 687 gtactggcaccaatactttccattattaactcgggacctttcttgagaccctgtctcaaa 628
Query: 181 taagcaagtaagcaaataaattaagtgtgttccctgccccttaggaacctcatgtatacc 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 627 taagcaagtaagcaaataaattaagtgtgttccctgccccttaggaacctcatgtatacc 568
Query: 241 aacaggtattaggataatggaaggcagaatgagtttca----ttttatacccatgattca 296
|||||||||||||||||||||||||||||||||||||| | ||||||||||||
Sbjct: 567 aacaggtattaggataatggaaggcagaatgagtttcaacag----agacccatgattca 512
Query: 297 cagacttcctgagaagaaggtgaagcgatacatagtcagacataaaaatgtctgctgctg 356
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 511 cagacttcctgagaagaaggtgaagcgatacatagtcagacataaaaatgcctgctgctg 452
Query: 357 ttctctgaaccccactgccagaatcttgggtgactattcatgtctactgtcagttctttg 416
||||||||||||||||||||||||||||||||||| |||| |||||||||||||||||||
Sbjct: 451 ttctctgaaccccactgccagaatcttgggtgactgttcacgtctactgtcagttctttg 392
Query: 417 ctttccagtttgcttaatctttacattaaagctgcatgatcgctgcactgatgtaagcta 476
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 391 ctttccagtttgcttaatctttacgttaaagctgcatgatcgctgcactgatgtaagcta 332
Query: 477 aaacatcaaccctaaccacgtgggcaggctgcagcctctgctcatgagatctccttctaa 536
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 331 aaacatcaaccctaaccacgtgggcaggctgcagcctctgctcatgagatctccttctaa 272
Query: 537 gacccagtcactgccctagcacgtttctacataggagaaggtgtggggggacactgggct 596
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 271 gacccagtcactgccctagcacgtttctacataggagaaggtgtggggggacactgggct 212
Query: 597 ctagaacgcct 607
|||||||||||
Sbjct: 211 ctagaacgcct 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 31
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 607
Length of database: 1007
Length adjustment: 10
Effective length of query: 597
Effective length of database: 997
Effective search space: 595209
Effective search space used: 595209
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no176_c24.g1 MSMg01no176_c24.g1 CHROMAT_FILE:
MSMg01no176_c24.g1 PHD_FILE: MSMg01no176_c24.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:47:38 2005
(422 letters)
>mm_chr6_4824259_4825081
Length = 823
Score = 716 bits (370), Expect = 0.0
Identities = 411/434 (94%), Gaps = 17/434 (3%)
Strand = Plus / Plus
Query: 1 tccaagatgactaacaataaaacaaaaatactgtcagcaaccaaggttcccaagcctatt 60
|||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 201 tccaagatgactaacaataaaacaaaaatactgtcagcaatgaaggttcccaagcctatt 260
Query: 61 acttcaacaagatttccactttgttgttgtgttttgtgactctggaaatacgttttt-tg 119
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 261 acttcaacaagatttccactttgttgttgtgttttgtgactctggaaatacgtttttctg 320
Query: 120 tttgtttgtttttaattgtttccaacttattctgcctcgagtaagttctaggttttactt 179
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 tttgtttgtttttaattgtttccaacttattctgcctcgagtaagttctaggttttactt 380
Query: 180 tgaaaaacacaggtatagagaaactgtaaagtaatttaagtacctaaaatgctgtttatg 239
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 381 tgaaaaacacaggtatagagaaactgtaaagtaatttaagtccctaaaatgctgtttatg 440
Query: 240 aagctgaagaatttattagaagtccattgcatttgtatttattatgaacaaaaagtt--- 296
||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 441 aagctgaagaatttattagaagtcctttgcatttgtatttattatgaacaaaaagttact 500
Query: 297 --------cataaatgtgagaaagaattgtacaagcctatagaattacagaaagacacta 348
||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 gttgaagacataaatgtgagaaagaattgtacaagcctatagaattacagaaagacacta 560
Query: 349 agatggaaagacagacaaagaaagaagagaagaaaggagggaggaaggaggggaggaagg 408
|||||||||||||||||||||||||||| || ||||||||||||||||||||||||
Sbjct: 561 agatggaaagacagacaaagaaagaaga-----aatgagggaggaaggaggggaggaagg 615
Query: 409 agagaggtagggag 422
||||||| ||||||
Sbjct: 616 agagagggagggag 629
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 19
Number of extensions: 4
Number of successful extensions: 4
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 422
Length of database: 823
Length adjustment: 9
Effective length of query: 413
Effective length of database: 814
Effective search space: 336182
Effective search space used: 336182
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
