BAC Information

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BAC

Clone NameMSMg01-176J11
Chromosome6 (Build37)
Map Location 26,572,519 - 26,572,895
singlet/doubletsinglet
Overlap genenone
Upstream geneGpr37, Pot1a, EG626912, LOC100041210
Downstream geneLOC100041247, Grm8
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-176J11.T7 (MSMg01no176_j11.b1)MSMg01-176J11.TJ (MSMg01no176_j11.g1)
ACCAG371245AG371246
length1,3131,287
length of high quality
(start - end)
779 (93 - 871)377 (75 - 451)
definitionCHROMAT_FILE: MSMg01no176_j11.b1 PHD_FILE: MSMg01no176_j11.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:48:32 2005CHROMAT_FILE: MSMg01no176_j11.g1 PHD_FILE: MSMg01no176_j11.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:48:32 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
CCATATTNNNNNNNNGACATTGGGCGCTATAGACTCCTATAGGGAGAGGA
TCCGCGGAATTCCATTCTAACAACAAAACCCTTTAGAAGCAATAATAACT
TTTCCTTAATACCTCTTAATACTCTATGAACTCCATTCCCCAATAGAAAG
ACATAGAATAACAGACTGGTAAAGTAAACAGGAGCCAACATTTTGCTGCA
TACAGGAAACCTACCACAGTGGCAAAGACAAACACTTCTTCAGAGTAAAA
GTCTGGAAAACAATTTTCTATGCTAATGGTCCCAAGAAACAAGCTAGAAT
ATCCATTCCAATATCGAACAAAATCGACTTTTAACCTAAAGTTATCAAAA
AATATAAGGAAACACACTTCATACTTATCAAACAAAAATCTACCAAGAAC
TCTCAATTCTGAACATCTATGCTCCAAATGCAAGGGCAACCACATTCATT
AAAGAAACTTAACTAAAGCTCAAAGCACACATTGCACCTCATACAATAAT
AGTGGGAGACTTTAACACCTTACTCTCATCAATGGACAGATCATGGAAAC
AGAAACTAAAAAAGACACAATAAAACTAACAGAAGTTATGACAATGGATT
TAACATATATCTATAGAACATTTTATCCTAAAACAAAAGGATATATCTTT
TTTTTCTTCTCAGAACCTCATGTTACCTTCTCCAAAATTGACTGTGATTG
TCTTTATAATCAGTTCCAAAACACACCTCAACAGATACAAGAAAACTGAA
ATAATCCCATGAATCCTAACAGACCACCATGGACTACGGCTGATTTTCAA
TAACAACATAAAGAATAGAAATCCCACATACATGTGGAAATTTAACAATA
CTCTACTCAATGATAACTTGGTCAAGGGAAGAAATAAAAAAAAAATTAAA
GACTTCTTAGAGTTCAATGAAAATGAAGCCCCAGTATACCCAAACCTATG
GGACACAATAAAAGCAGTGCTAAGAGGAAAACTCATAGCTCTGAGTGCCT
CCAAAAAGAACTGGAGAGAGCTTACCTAACAGCTTAAAATACCCCCTGAA
GCTCTCAACCAAAGGGAAGCAATGGAACCTAACAAAAAAACAGGGCCAGA
AAAAATTCAACCTCGGGCTTGAAATCCACCCATTGGAACCAAGAGAAATC
TTTTCAGAATCCAACACACCCGGGCCTGTTTGTTGAAAAAAAAAACAATA
TAAAACACTCTTATCCCAATTACAATAAGGGGCACGGGACGCCTCTCTTT
TATCTAATCTCAAATTGAAGAAAGGGGAACTTATTTTCTCTCTAGAGAAT
CCCAAAACTCTTC
NNNTTTATGTTGGAGCCTGGGGCGCCXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXAATGTCATTTGTAAACACAAACAAAC
CTTCCTTCAGAATTAGTCATACCGTGACATTGAAAATTCTTTAGCTTTTA
TAAACATATTCATCATATTCATTAAAGTAAAATTCCATTCTATTTTTTTC
TCCCTTCCATATGTCCCTACTCCACAATCAAATGAAGTCTATAACACAAG
AATCTAGCCCCAAACACACATTTGCTATTTTGGGAACTTTTCTTGCTCCA
TGGCATAAAACATCTGGTCAAGTATAGCTACCTTCTGTGGCTATAATCCT
CTCCTGGGAAATTAGTCTCTTTGGAATATCTTTATGCAAATAAATATTAT
TTTTGCTTAGACTTCAGAAAGTGTCTAGTGTTGTAAATTGTTGCTCAAAA
ATATTTTTTTTCCCCCCCCCAGTGATTTTAACACCTCCCTAACAAAAAAA
GTTAGTTGGACATAATTTCATAATGCCCTTGAAAATGGGTTTGACTTCTG
CTCAGCATTTATATTCATTAGTCCCATTGTTTTTGAGATGATAATTATGA
CATTTCACCCTTACCTTTCCTCATTCCAAAACTTCTCATACACTCTGTCA
AATCAATGTTCTTTTTACATGATCTGTTGCCAGCTAAATACTTTCTCAAA
CAATTGTCATTACATAATTTTAAAAATTCTTTATTTGTTCATTAAGAAAA
ATGCCTCATAATTTTAGTTTTGTGAATAAGAAGGAACATTGGGGAAGTGG
GAATAAAGAGTAATAGAAACAGAAATAGTGAAATATATTTGACAATAGTA
GATAATTTAAATACTAACTGAAGTTTAAGAACTTTGTAATGTGTTCTTTA
TTACATTCTCCAACAATATGTAATTACTGCTTGATTATTAAAAATAACTT
TTCCCCTTGTGATTAAACCCAAAATACCTTACTTACCAAACTAGTTTTGA
AGCTTATATTTTTGAAATTCACCCTCTGTTGGACAGGGCCCACCCATTTA
ATTTTTAACTAAAAATATGTCCCTTATTTAAAACCAAAACCCTAAATAAA
AACCCGGGGCAAAATATAGTAAACCCACCCCCCATAACCAAATGAATAAA
TTTTCTCATAAACCCCCCCCCAAAAGGGATCTTATTTTGAGGGGGCCTTC
TTATTTCTCCTCATATTCCAGACTGTTTTTCCAAAATTCAAACAGCATAA
TGCAGCCCTGATATTTATAACCCACATCTTCCATTCA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no176_j11.g1 MSMg01no176_j11.g1 CHROMAT_FILE:
MSMg01no176_j11.g1 PHD_FILE: MSMg01no176_j11.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:48:32 2005
         (377 letters)



>mm_chr6_26572319_26573095
          Length = 777

 Score =  721 bits (373), Expect = 0.0
 Identities = 376/377 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   aatgtcatttgtaaacacaaacaaaccttccttcagaattagtcataccgtgacattgaa 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 aatgtcatttgtaaacacaaacaaaccttccttcagaattagtcataccgtgacattgaa 260

                                                                       
Query: 61  aattctttagcttttataaacatattcatcatattcattaaagtaaaattccattctatt 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 aattctttagcttttataaacatattcatcatattcattaaagtaaaattccattctatt 320

                                                                       
Query: 121 tttttctcccttccatatgtccctactccacaatcaaatgaagtctataacacaagaatc 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 tttttctcccttccatatgtccctactccacaatcaaatgaagtctataacacaagaatc 380

                                                                       
Query: 181 tagccccaaacacacatttgctattttgggaacttttcttgctccatggcataaaacatc 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 tagccccaaacacacatttgctattttgggaacttttcttgctccatggcataaaacatc 440

                                                                       
Query: 241 tggtcaagtatagctaccttctgtggctataatcctctcctgggaaattagtctctttgg 300
           |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 441 tggtcaagtatagctaccttctgtggctataatcctctcctgcgaaattagtctctttgg 500

                                                                       
Query: 301 aatatctttatgcaaataaatattatttttgcttagacttcagaaagtgtctagtgttgt 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 aatatctttatgcaaataaatattatttttgcttagacttcagaaagtgtctagtgttgt 560

                            
Query: 361 aaattgttgctcaaaaa 377
           |||||||||||||||||
Sbjct: 561 aaattgttgctcaaaaa 577


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 18
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 377
Length of database: 777
Length adjustment: 9
Effective length of query: 368
Effective length of database: 768
Effective search space:   282624
Effective search space used:   282624
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)