Query= MSMg01no176_k05.b1 MSMg01no176_k05.b1 CHROMAT_FILE:
MSMg01no176_k05.b1 PHD_FILE: MSMg01no176_k05.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:48:38 2005
(623 letters)
>mm_chr6_80020101_80021123
Length = 1023
Score = 1168 bits (604), Expect = 0.0
Identities = 619/624 (99%), Gaps = 2/624 (0%)
Strand = Plus / Plus
Query: 1 tttccatttgtacaaaattcccctgggcattttttccccatttcaatgaaggcttcatta 60
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 201 tttccatttgtacaaaattcccctgggcatcttttccccatttcaatgaaggcttcatta 260
Query: 61 cttttattaaaactttcatgatgtttataacaaaatgatgttgctattgctctgtaagaa 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 cttttattaaaactttcatgatgtttataacaaaatgatgttgctattgctctgtaagaa 320
Query: 121 actaaaatatact-aaaaaaataaaagatatatttctttacatagtaaaatcttcaaaaa 179
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 actaaaatatactaaaaaaaataaaagatatatttctttacatagtaaaatcttcaaaaa 380
Query: 180 atcttatggtgataatatgactgaaaggtcaggttttattaaatagaaaaagtaagtgta 239
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 atcttatggtgataatatgactgaaaggtcaggttttattaaatagaaaaagtaagtgta 440
Query: 240 gacagattaacttctgattatatgcaaacacatatataagtaaacatatggaacacacat 299
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 441 gacagattaacttctgattatatgcaaacacatatataagtaaacatatgg-acacacat 499
Query: 300 atatgcaaatagaactaaatatatttggaagaaataagtgtaaattaggaataatggaat 359
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 500 atatgcaaatagaactgaatatatttggaagaaataagtgtaaattaggaataatggaat 559
Query: 360 aaatttaaaaattcccatatttctttgttttgggggcttcctagggggaaaagtctgagg 419
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 560 aaatttaaaaattcccatatttctttgtttttggggcttcctagggggaaaagtctgagg 619
Query: 420 ctctgtatatagatgaacctgtacttcaattcacacagatctgcctgactttgtttgggt 479
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 620 ctctgtatatagatgaacctgtacttcaattcacacagatctgcctgactttgtttgggt 679
Query: 480 ttcttttcttgtttctttctttgtccttttctttcttttctttctttttcatttactcac 539
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 680 ttcttttcttgtttctttctttgtccttttctttcttttctttctttttcatttactcac 739
Query: 540 tttacattcctctcactgcccctcctccccatcaacttctgacccagttcttcctccctc 599
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 740 tttacattcctctcactgcccctcctccccatcaacttctgacccagttcttcctccctc 799
Query: 600 ccccatctccttctcctctagaag 623
||||||||||||||||||||||||
Sbjct: 800 ccccatctccttctcctctagaag 823
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 36
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 623
Length of database: 1023
Length adjustment: 10
Effective length of query: 613
Effective length of database: 1013
Effective search space: 620969
Effective search space used: 620969
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no176_k05.g1 MSMg01no176_k05.g1 CHROMAT_FILE:
MSMg01no176_k05.g1 PHD_FILE: MSMg01no176_k05.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:48:38 2005
(689 letters)
>mm_chr6_80070383_80071471
Length = 1089
Score = 1301 bits (673), Expect = 0.0
Identities = 685/689 (99%)
Strand = Plus / Minus
Query: 1 gcaaaggcatcagggttctaggtttccaaaaccaaataccaatgttgttgaagcagtgga 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 818 gcaaaggcatcagggttctaggtttccaaaaccaaataccaatgttgttgaagcagtgga 759
Query: 61 aaacattgtccaagacagtatttaccttagtgagtttcctatagaatcatagtaatgaaa 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 758 aaacattgtccaagacagtatttaccttagtgagtttcctatagaatcatagtaatgaaa 699
Query: 121 gaattactaaaaagaattaaggaagtcttaggtttgcacaggtagacagctacctataat 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 698 gaattactaaaaagaattaaggaagtcttaggtttgcacaggtagacagctacctataat 639
Query: 181 gggaaccagaggggggaaaaaagttaacaaaactgtacagtgagctgatggccaccaaga 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 638 gggaaccagaggggggaaaaaagttaacaaaactgtacagtgagctgatggccaccaaga 579
Query: 241 actgaggacttttcacaggttttgatttaattccagaatttacattcaacattgacaaca 300
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 578 actgaggacttttcacaggttttgatttaattccagaagttacattcaacattgacaaca 519
Query: 301 caaaaataagaataggatcttaatatgtcagggaaataattacttgtataaccagtttat 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 518 caaaaataagaataggatcttaatatgtcagggaaataattacttgtataaccagtttat 459
Query: 361 taacaaaaagctcaattttcttacttctgaaacaggaaccacaggcagaaattgagtatt 420
||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||
Sbjct: 458 taacaaaaagctcaattttcttagttctgaaacaggaaccataggcagaaattgagtatt 399
Query: 421 gtcttgggaaataatgttttacaagttacaatcaggatagctatctatagacaaaattaa 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 398 gtcttgggaaataatgttttacaagttacaatcaggatagctatctatagacaaaattaa 339
Query: 481 tatatacctgctgtaatttattagactctttccctccagcttagaggttcggggctctgc 540
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 338 tatatacctgctgtaatttattagactctttccctccagcttagaggttcagggctctgc 279
Query: 541 aaatgttattttctctgaaatcagttttattatttaggtatcatcaccacagaattcata 600
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 278 aaatgttattttctctgaaatcagttttattatttaggtatcatcaccacagaattcata 219
Query: 601 ctctaaatgtagagtagggtcacttacccacatgtagcacagcagtaggtggaagactca 660
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 218 ctctaaatgtagagtagggtcacttacccacatgtagcacagcagtaggtggaagactca 159
Query: 661 ggaatgaacccaaatgtacacacaccagt 689
|||||||||||||||||||||||||||||
Sbjct: 158 ggaatgaacccaaatgtacacacaccagt 130
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 34
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 689
Length of database: 1089
Length adjustment: 10
Effective length of query: 679
Effective length of database: 1079
Effective search space: 732641
Effective search space used: 732641
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
