CCAATCCCTTTNNNAAAACAGTGCGCGCTAXXXXXXXXXXXXXXXXXXXX
XXXCGCGGAATCAATATTTACATTCAAGCCTTTTAAACCCCACATCCAAT
TTTAACATACAAAATAATTCCCGAAAACAACCACAAGGAACAAAAAGAAC
TAAAATATCTACAGATGGAACAAAGCACTGGCATTTTAGCTAACAGTATA
CAGAGATAATGTTGGGTCTGAATAGTTTCTAGAAAAATTAAAGCTTTGAA
TATATATATATATGCATATATATATACATACACACATAGATAGATAGATA
GATAGATAGATAGATAGATAGATAGATAGATAGATAGATAGATATTAAAA
ACAAACCAAGTAGAAAGGTTTGTCAGGATACTACAGAAAGCATAATAGTT
TAGTTTTCATATTTTCTTTAAGTTGTCATAAGTCAGTAGCAATGCAATTT
TATAAATTAACATGGAAAAATCTTACAGTTTTCTTTAGAAACAGAGCCTT
TTGAAAATGTGAATTTTTATATATCTTTCAAAGTTGCTAGTTTACTGTCT
ATAAGAAAAAAGAAACTGACTTTATAATTGAAATAGTTGGGTTATATGTC
TATGAGTCTTTTTTTAACATACTTGCTACTAGAAAAATAATTGACATTGC
ACAGATGCAGCCCTATCAAACATTTGACTGGTAACCATATTCTCACTAAT
ATAATGACATTATAATTAAAATCTGAAATCAGATATTATGATACCATGAT
TTATTTTAATTCCCCTTGATGCCTCATGATTTTGAAATTTCTAGTTTATA
TACTTGCAAATCTGTATTTAAAGCATTTTTCTCGTTAAAAATATATTCGC
TTACTAGGAATAATTCTTGAATTTTAAATTAGTACTCGTTATTGAGACAC
TTGCTGATGACTTAATTCATTTGTAACCTATATGTCTTAAAATGAGTAAT
TATTTTTAAACATTTAAAAATAAGCTTATAATTATAAACCCCCAACTAGT
GAGAAGATTTAGGCATCTACTGGCAGTCTCCCGGCCTCAGCTGAACTATA
AGTTGAAGGCCTTCCCAGGCTTTTGAAAAAATCAACCTGGAAATTTCTAG
GAACTTAAAAAAAACCCCTAGTGGATTGTCTTCCCAGAACATTTTAGAAA
CCCTTTAATTCTC

CCCGTTTCTTTNNNNAAAGCAGGTGAGCCTGGGGXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCCCTTTAGGTTCCCGCTGGG
GAACGAGAGTACCAGNGAGTACCGTTTTACGAGGCAAGTCTGATCTTGAA
CTTTCTAAGGAAATTCAAGACAGTCTATCAGAAGTAAAGTGGAAAATGTT
TGGCCTTGAATTTTTTCTAGTGTTAGAAGCCCTTTTGTTCCTTTTCACAT
GTTATCAAGTGGTTAAGGCAGGGCGGATTCTAGATGAAATTCAGGACAAG
CTATCAGAAGTAAAGCGGGGAGAGAGAGTAGGAACAAAGAGAAAATATGG
TACACAAAATAAGTATACAGGCCTTTCCAAGGGTCTTGAACCCGAGGAAA
AGTTAAGGTTAGGTATTAATACCTGGAGAGAGATTAGAAGAAAAAGAGGA
AAAAGGGAAAAGAAGAAAGATCAATTAGCGGAGGTCTCTAGGAAAAGGAG
CCTGTGCTCATCGCTGGATGGGCTCGGGGAGCCAGCTCTTAGTAGCTCTG
AAGCAGGTGAAGAATCCTCCTCTGAGGAAACAGACTGGGAGGAAGAAGCA
GCTCATTATGAGAAAAAAGGGTACCAGCCAGGTAAAGTGCTAGCTAATCA
GTTAAGGAAGCCAAAAGCGGCTGGCGAAGGCCAGTTTGCTGATTGGCCTC
AGGGCAGTCGGCTTCAAGGTCCGCCCTATGCGGAGTCCCCGCCCTGCGTA
GTGCGTCAGCCCTGCGCAGAGAGGCAGTGCGCAGAGAGGCAGTGCGCAGA
CTCATTCATTCCCAGAGAAGGACCAAGGATAATACCACAGGCATTTTCCA
GTCTTTTGAAGGACCCCAGGGTTGGGCGTTGTTCCCGCCTTCCGGTAGAA
TTACGTACCAGATTAAAGAACTTTTGCCGAGTCCGGTTCCCGTAAATACG
GAACCCCAAGGCTAAATTTTTCCCTTGGGGGCCAATTAAAAACAGGTCTC
CCCCCGGCAATGGGCAACTTAACTTCCCTTGCCGCGAACTGGTACAAAAC
GGGTTTGTTAAAAAACCCGCCCCCTCCCCCCTAATAAAATGGGGGCTCAA
AAATTATATTGTGTTAAAGGCTAGCAAGACTTCTTTTTCTTGTTATCATC
AACC

Query= MSMg01no176_o09.b1 MSMg01no176_o09.b1 CHROMAT_FILE:
MSMg01no176_o09.b1 PHD_FILE: MSMg01no176_o09.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:49:13 2005
         (716 letters)



>mm_chr6_20790346_20791461
          Length = 1116

 Score = 1183 bits (612), Expect = 0.0
 Identities = 678/716 (94%), Gaps = 27/716 (3%)
 Strand = Plus / Minus

                                                                        
Query: 1    caaggaacaaaaagaactaaaatatctacagatggaacaaagcactggcattttagctaa 60
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1100 caaggaacaaaaagaactaaaatatctacagatggaacaaagcactggcattttagctaa 1041

                                                                        
Query: 61   cagtatacagagataatgttgggtctgaatagtttctagaaaaattaaagctttgaatat 120
            |||||||||||||||||||||||||||||||||||||| |||||||||||||||||    
Sbjct: 1040 cagtatacagagataatgttgggtctgaatagtttcta-aaaaattaaagctttga---- 986

                                                                        
Query: 121  atatatatatgcatatatatatacatacacacatagatagatagatagatagatagatag 180
                        ||||||||||||||||||||          | ||||||||||||||||
Sbjct: 985  ------------atatatatatacatacacac----------acatagatagatagatag 948

                                                                        
Query: 181  atagatagatagatagatagatagatagatattaaaaacaaaccaagtagaaaggtttgt 240
            |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 947  atagatagatagatagatagatagatagatattaaaaacaaaccaagtggaaaggtttgt 888

                                                                        
Query: 241  caggatactacagaaagcataatagtttagttttcatattttctttaagttgtcataagt 300
            |||||||||||||||||||||||||||||||||||| |  ||||||||||||||||||||
Sbjct: 887  caggatactacagaaagcataatagtttagttttcagaaattctttaagttgtcataagt 828

                                                                        
Query: 301  cagtagcaatgcaattttataaattaacatggaaaaatcttacagttttctttagaaaca 360
            |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 827  cagtagcaatgcaattttataaattaacatggaaaaatcttacaattttctttagaaaca 768

                                                                        
Query: 361  gagccttttgaaaatgtgaatttttatatatctttcaaagttgctagtttactgtctata 420
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 767  gagccttttgaaaatgtgaatttttatatatctttcaaagttgctagtttactgtctata 708

                                                                        
Query: 421  agaaaaaagaaactgactttataattgaaatagttgggttatatgtctatgagtcttttt 480
            || ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 707  aggaaaaagaaactgactttataattgaaatatttgggttatatgtctatgagtcttttt 648

                                                                        
Query: 481  ttaacatacttgctactagaaaaataattgacattgcacagatgcagccctatcaaacat 540
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 647  ttaacatacttgctactagaaaaataattgacattgcacagatgcagccctatcaaacat 588

                                                                        
Query: 541  ttgactggtaaccatattctcactaatataatgacattataattaaaatctgaaatcaga 600
            |||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 587  ttgactggtaacaatattttcactaatataatgacattataattaaaatctgaaatcaga 528

                                                                        
Query: 601  tattatgataccatgatttattttaattccccttgatgcctcatgattttgaaatttcta 660
            |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 527  tattatgataacatgatttattttaattccccttgatgcctcatgattttgaaatttcta 468

                                                                    
Query: 661  gtttatatacttgcaaatctgtatttaaagcatttttctcgttaaaaatatattcg 716
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 467  gtttatatacttgcaaatctgtatttaaagcatttttctcgttaaaaatatattcg 412


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 56
Number of extensions: 14
Number of successful extensions: 14
Number of sequences better than 10.0: 1
Number of HSP's gapped: 8
Number of HSP's successfully gapped: 1
Length of query: 716
Length of database: 1116
Length adjustment: 10
Effective length of query: 706
Effective length of database: 1106
Effective search space:   780836
Effective search space used:   780836
X1: 9 (17.8 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 9 (18.3 bits)
S2: 9 (18.1 bits)