BAC Information

Click to search

BAC

Clone NameMSMg01-176P06
Chromosome6 (Build37)
Map Location 85,209,514 - 85,209,745
singlet/doubletsinglet
Overlap geneSfxn5
Upstream gene4930504D19Rik, Cyp26b1, Exoc6b, LOC665129, Npm3-ps1, EG545861, EG623016, Spr, LOC665086, LOC665089, Emx1
Downstream geneRab11fip5, Noto, Smyd5, 1700040I03Rik, Cct7, Fbxo41, Egr4, Alms1, LOC100043497, EG665134, LOC100043493, Cml3, LOC623273, Cml5, Cml4, LOC100043504, LOC100043508, Cml2, LOC665177, 1700019G17Rik, Cml1, Tprkb, EG434057, LOC665213, Dusp11, Figla, Add2, Tgfa
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-176P06.T7 (MSMg01no176_p06.b1)MSMg01-176P06.TJ (MSMg01no176_p06.g1)
ACCAG371497AG371498
length1,2551,240
length of high quality
(start - end)
288 (442 - 729)232 (470 - 701)
definitionCHROMAT_FILE: MSMg01no176_p06.b1 PHD_FILE: MSMg01no176_p06.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:49:21 2005CHROMAT_FILE: MSMg01no176_p06.g1 PHD_FILE: MSMg01no176_p06.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:49:21 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
CATACCTNNNNNGCTCACTGCGCGCTAXXXXXXXXXXXXXXXXXXXXXXX
XCGCGGAATTCTGGCAGGATTGAAGACCTTTATAGCCCCAACCAACCTAA
GCTATTCAGAATTAAGAGCCTATATATTATGTGACAAGATGGTTTTCAGA
TAGTATACAAGACAAACCAGGACCTAACAGGTGTACAATTATAAGCCTTT
TTAAGTTAGGATACATGGCCGAGTGCTTTATTTAATTGACAAACATGGAC
AGGTGTTGGGCGTATCTTATACTTAATAAATTAAAACATGGTACTAGTTG
TTCTCAATTTATATCTGAGAGAAAAAGCCTTTTAATTGGACCAAAAGAAG
GAAATGTAGATTGCTGAATGTAACCAGGTGAGGCCCATGAAATCTTAGTC
AGATAAGGCTGTTTACTGATTGGGCAGTGGAACAAGAAGGCCGAGCCGAA
AAGTTTTATAGAGGGGATAGACAGAGGAGAGAGACAGAGATAAGATGCAA
CATATAGATGATGATAAACTGGATCCACCTGGCCTGAAATAGCCATAGGT
AGCTATGGATATCATACAAGAGCAATAGAGTAGGGCACATTTGAACTATT
CTAGATGTGCAGCTTATATCAATATCAATTGAGTTTTGAGTTCTTTGTGT
GGGCATTTTGGGAGTTAAGGATTTACTATTATAAATCTGGCTGGTAAATT
ATAAGCCTCTGGAGCTTTCATTTTACGGAGTTAGCAGGACGCAGATGGCC
TGGGAAGATACGAGCAATTTGGCAGCAGCAAACCTGCGAAGACCATGGCT
TGTGCCTCCCAGTGAGCCAGCGGAGACCGCATTGTATGGGTGTATCCCTG
CCCAGCCCGCATTGCTTTTCATTATTACCCGCTACCGGTTCACGCAAAGA
AAATCCCCAGCTTACGCAGCTCTACCCCCCCCTCCCTTTTCTCTCTCCCT
CTTCCTTTCTTCTTTCTCTCTCCCTCTCCTCTCCCTTCCTCCTCTTCTCT
CCCTCCTCCCCTTTTTCCTCCTATCTCTTCCCCCTCCTCTCTACTCCTCT
CCCCTCCCCCTTACCTCTCTTTATCTCTTCCCTCCTCCTTCCTCCACTCC
TCCTCCCCCTCCCTTCTCTTCTTCTTATATCCCTCCTTCCTCCTTCTTCT
CCTCTCTTTCTTTTACCTCCTCTTCTCCCTCCTCCCCTTCTCCCCTTACT
TATCCTCCTCTCACCCCTTCTTTTCTTCTCCTCTCCCGTCTCTCCTCCTA
TTCCC
CCCCNCCTCACACGTGTAGCTGGGGCGCCXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXCTTTAAACCCCCCAGGGCTACTTGGTGAGA
TCATGTCTAACCTTTTAAACCCCCCTATAAAAATGAAATGAAATTAAACA
TTTTTAATGTTAGTTTTGTTTGTTTGTTTGTTTGTTTTAAGGTAGAGCAG
AGTCCTAGCAGGCCTCTTTGACCAGGGCTGTGGCTCAGTTTGTTGAACAC
ATGTTCAAAGATCTTGGTTCAGACCCCAACACTGACTAAACCAGGTGTGG
TGGCACATCTGTAATCCTAGCCCTTAGGAGGTAGAGGCTGGAGGATCAGG
AGGTCTTCAGCTACTTTGAGGCCATCTTGGGCTACACGAAAGCATGTCTT
GTTTTATCAAAAACAATAAAGCGTGAAAAACAAAAGCAAAAAAAGCTAGC
ATGTCCCTTATGTCTGCAATGAAACTTAGCATGAAACACATATTTATCTG
AAAATAAGCCAACATACCCAAGAGGGATCAGGGAACCACAAAGTGGAGAG
AAGGGTCCACGCAGAGTTGGGAGTTCACTAGGATGCAATATGGCTGCTTC
ACCCACCCACTAGCAATGTGCCTGGGGTATGTGCCAAAGACATAGAGGAG
ACAAACGGCCACTTACTGTCACCTACTCAACGTCCAGCCATCATGCCCCC
AGAACCTTGGACAGGGACAGCCTGGGAAGGATCCCCAGGGAGGGCTGCAG
TTCAGGGGACTGAAGCCCGTCTGTTCTTGCTTCTCGGAGTCCTTTGGCCT
GAAACATTTGGTGTACCCCATTAATATTATAAAGCCCAGTGTTTGCAGGC
TCGGAAAGTCAGCCCGTTTTCTCTGATATGGCAAGTCCTGTTTAAGGAAA
CCATCTGTCATTAATGGCTCTTCACCCATCCCTAACCACATTTAGTGATC
TAAAAAATCCCTGGTAAATAATCAGCTTCAGGAAACATAATGAAAATTTG
ACCATCCCTTGCCCAAAATCTCCCCGGGTTTCTCCTTAAAATCCTCCCTA
ATTTCCTTTAAAAACCATTTTTAATCCTACTGCTGCTCCCATTCTGTCCC
AAAGTGTCAAAATAAACCTCTCAAAATTTTTCCCCATCATATTCTATATT
TTCCCCCTCTCTCCTTCATATCTTGTGTGACTATCTCCTCTCTCCTTTTA
TAAAATCATTTATCCCTCTTTATCACTCTATTTTCCTGAT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no176_p06.g1 MSMg01no176_p06.g1 CHROMAT_FILE:
MSMg01no176_p06.g1 PHD_FILE: MSMg01no176_p06.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:49:21 2005
         (232 letters)



>mm_chr6_85209314_85209945
          Length = 632

 Score =  433 bits (224), Expect = e-126
 Identities = 230/232 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   tgaaacttagcatgaaacacatatttatctgaaaataagccaacatacccaagagggatc 60
           |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 432 tgaaacttagcatgaaacacatatttatttgaaaataagccaacatacccaagagggatc 373

                                                                       
Query: 61  agggaaccacaaagtggagagaagggtccacgcagagttgggagttcactaggatgcaat 120
           |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 372 agggaaccacaaagtggagagaagcgtccacgcagagttgggagttcactaggatgcaat 313

                                                                       
Query: 121 atggctgcttcacccacccactagcaatgtgcctggggtatgtgccaaagacatagagga 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 312 atggctgcttcacccacccactagcaatgtgcctggggtatgtgccaaagacatagagga 253

                                                               
Query: 181 gacaaacggccacttactgtcacctactcaacgtccagccatcatgccccca 232
           ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 252 gacaaacggccacttactgtcacctactcaacgtccagccatcatgccccca 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 11
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 232
Length of database: 632
Length adjustment: 9
Effective length of query: 223
Effective length of database: 623
Effective search space:   138929
Effective search space used:   138929
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)