BAC Information

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BAC

Clone NameMSMg01-177B05
Chromosome6 (Build37)
Map Location 69,262,696 - 69,263,140
singlet/doubletsinglet
Overlap geneIgk
Upstream geneIgkv2-107, Igkv11-106, Igkv2-105, LOC384408, Gm1067, Igkv15-103, Igkv15-102, Igkv20-101-2, Igkv15-101-1, Igkv15-101, Igkv14-100, Igkv1-99, Igkv12-98, Igkv15-97, Igkv10-96, Igkv2-95-2, Igkv2-95-1, EG434031, EG667550, Igkv2-93-1, Igkv19-93, Gm1408, ENSMUSG00000056850, Igkv4-90, Igkv13-89-1, Igkv12-89, Igkv1-88, Igkv13-87, Gm459, Igkv13-85, Igkv13-84, Igkv4-83, Igkv13-82, Gm460, Igkv13-80-1, Igkv4-80, Gm194, EG628498, Igkv4-78, EG667621, Igkv13-76, Igkv4-75, Igkv13-74-1, LOC236047, Igkv13-73-1, EG628516, Gm1499, Igkv13-71-1, Igkv4-71, Gm1502, EG628541, Gm1419
Downstream geneIgkv12-67, Igkv12-66, Igkv4-65, Igkv13-64, EG628571, Igkv13-62-1, EG636752, Igkv13-61-1, Igkv4-61, EG667683, Igkv4-60, Gm1077, Igkv13-57-2, Gm1418, Igkv13-57-1, Gm189, Igkv13-56-1, Igkv4-56, Igkv13-55-1, Gm1524, Igkv13-54-1, Igkv4-54, Gm1420, Igkv4-51, Gm1069, Igkv12-49, Igkv5-48, ENSMUSG00000029975, Igkv12-46, Igkv5-45, Igkv12-44, Igkv5-43, Igkv12-42, Igkv12-41, Igkv5-40-1, Igkv12-40, Gm1409, Igkv12-38, Gm1410, Igkv18-36, Igkv1-35, Igkv8-34, U29423, ENSMUSG00000053690, Igkv8-31, Igkv8-30, LOC545852, Igkv6-29, Igkv8-28, Igkv8-27, Igkv8-26, LOC667812, Igkv6-25, Igkv8-24, Igkv8-23-1, Igkv6-23, LOC667829, Igkv8-22
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-177B05.T7 (MSMg01no177_b05.b1)MSMg01-177B05.TJ (MSMg01no177_b05.g1)
ACCAG371573AG371574
length715720
length of high quality
(start - end)		565 (47 - 611)642 (77 - 718)
definitionCHROMAT_FILE: MSMg01no177_b05.b1 PHD_FILE: MSMg01no177_b05.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:49:34 2005CHROMAT_FILE: MSMg01no177_b05.g1 PHD_FILE: MSMg01no177_b05.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:49:34 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
TCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCG
GAATTCTTTGTTCCGCTCTGAGCCCCATTTTTTAATGGGGTTATTTGATT
TTCTGAAGTCCACCTTCTTGAGTTCTTTATATGTTAGATATTAGTCCCCT
ATCTGATTTAGGATAGGTAATGGAGACATTCTTAATACAGATATTTTAAT
AAGTTTTCAAAGACAATACTATCATCTCCAGGCTGTCAATGAACAGGGAA
CGGAAAAGACTGGCTCTCCAAATTCATACTGGATACTCACTGTTAATAGA
ATTCACAAAGTCCTACCACTAAATGGTTAAGCAATGAGCCTGTTTGGATA
GAAAATATTCTCTTTTATTAGATATTTAATTTATTTACATTTATTTTTAA
TAGAAACCTCATGGAAAATTGTATTCATATTGGTAAGTTTTTTTTTCATA
TAAAGGACAGCATTTAATTGAGGGTGGCTTATAAATTGAGAGTTTCAGTC
CATTATCATCGTAGCAGGAAGCATGGCAGCATACAGGCAGATATGTTGCT
GGAGAAGGAGCTGAGAGTTCTACATTTTGATCCAAAGGTAACCAGGAGAT
CTCTCTTCTGTACTAAGTAGACCTTATACCTAGAGCCTCAAAACCCAACC
CTCCACAGTGATGGCCTTTCTCCTAATAGTGCAACTTCCCTTGAGTCAAG
CTTATACCAACTGTG

CGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXTCACCTGAGGAATACCGAATGGCA
GAGAAGCACCTGAAAAAATGTTCAACATCCGTAATCATCAGGGAAATGTA
AATCAAAACAACCCTGAGATTCCACCACACGCCTGTCAGAATGGCTAAGA
TAAAAAATTCAGGTGACAGCAGCTGCTGGCGAGGATGTGGAGAAAGAGAA
ACACTCCTCCATTGTTGGTGGGATTGCAGGCTTGTACAACCACTCTGGAA
ATCAGTCTGGCGGTTTCTCAGAAAATTGGACATAGTACTACTGGAGGATC
CAGCAATACCTCTCCCCCGGGCATATATCCAGAAGATGTCCCAAACGGTA
AGAAGGACACATGCTCTACTATGTTCATAGCAGCCTTATTTATAATAGCC
AGAAGCTGGAAAGAACCCAGATGCCCCTCAACAGAGGAATGGATCCAGAA
AATGTGGTAATTTACACAATGGAGTACTACTCAGCTATTAAAAAGAATGA
ATTTATGAAATTCTTAGCCAAATGGATGGACCTGGAGGGCATCATCCTGA
GTGAGGTAACACATTCACAAAGGAACTCACATAATATGTACTCACTGATA
ACTGGATATTTGCCTAAAACCTAGGATGCCCAAGATATAAGATACAATTT
GCTAAACACATGAAACTCAN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no177_b05.b1 MSMg01no177_b05.b1 CHROMAT_FILE:
MSMg01no177_b05.b1 PHD_FILE: MSMg01no177_b05.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:49:34 2005
         (565 letters)



>mm_chr6_69262629_69263593
          Length = 965

 Score =  785 bits (406), Expect = 0.0
 Identities = 433/446 (97%), Gaps = 8/446 (1%)
 Strand = Plus / Minus

                                                                       
Query: 126 ggagacattcttaatacagatattttaataagttttcaaagacaatactatcatctccag 185
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 512 ggagacattcttaatacagatattttaataagttttcaaagacaatactatcatctccag 453

                                                                       
Query: 186 gctgtcaatgaacagggaacggaaaagactggctctccaaattcatactggatactcact 245
           |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 452 gctgtcaatgaacagggaacggaaaagactggctctccaaattcatactggagactcact 393

                                                                       
Query: 246 gttaatagaattcacaaagtcctaccactaaatggttaagcaatgagcctgtttggatag 305
           ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 392 gttaatagaattcacaaagtcctaccactaaatggttaaccaatgagcctgtttggatag 333

                                                                       
Query: 306 aaaatat-------tctcttttattagatatttaatttatttacatttatttttaataga 358
           |||||||       ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 332 aaaatataataaaatctcttttattagatatttaatttatttacatttatttttaataga 273

                                                                       
Query: 359 aacctcatggaaaattgtattcatattggtaagtttttttttcatataaaggacagcatt 418
           ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 272 aacctcatggaaaattgtattcatattggtaagtttttttt-catataaaggacagcatt 214

                                                                       
Query: 419 taattgagggtggcttataaattgagagtttcagtccattatcatcgtagcaggaagcat 478
           ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 213 taattgagggtggcttataaattcagagtttcagtccattatcatcgtagcaggaagcat 154

                                                                       
Query: 479 ggcagcatacaggcagatatgttgctggagaaggagctgagagttctacattttgatcca 538
           ||||||||||||||||| || |||||||||||||||||||||||||||||||||||||||
Sbjct: 153 ggcagcatacaggcagacatattgctggagaaggagctgagagttctacattttgatcca 94

                                     
Query: 539 aaggtaaccaggagatctctcttctg 564
           ||||||||||||||||||||||||||
Sbjct: 93  aaggtaaccaggagatctctcttctg 68


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 18
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 565
Length of database: 965
Length adjustment: 10
Effective length of query: 555
Effective length of database: 955
Effective search space:   530025
Effective search space used:   530025
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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