BAC Information

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BAC

Clone NameMSMg01-177B22
Chromosome6 (Build37)
Map Location 68,468,158 - 68,587,576
singlet/doubletdoublet
Overlap geneIgk, Igkv14-100, Igkv1-99, Igkv12-98, Igkv15-97, Igkv10-96
Upstream geneTacstd2, Igkv2-137, 4930515G16Rik, Igkv1-136, Igkv1-135, LOC723992, EG628006, Igkv14-134-1, Igkv17-134, EG628027, LOC384401, EG628042, EG243423, EG628056, EG628072, Igkv9-129, Igkv9-128, EG243433, Igkv14-126-1, LOC723993, EG628127, ENSMUSG00000050218, EG243431, EG628144, Igkv1-122, EG667435, EG434025, Igkv9-119, Igkv14-118-2, Igkv14-118-1, EG384405, Igkv11-118, Igkv1-117, EG434026, EG628206, Igkv11-114, Igkv2-113, LOC232047, EG381776, Igkv14-111, Igkv1-110, Igkv2-109, Igkv1-108, Igkv2-107, Igkv11-106, Igkv2-105, LOC384408, Gm1067, Igkv15-103, Igkv15-102, Igkv20-101-2, Igkv15-101-1, Igkv15-101
Downstream geneIgkv2-95-2, Igkv2-95-1, EG434031, EG667550, Igkv2-93-1, Igkv19-93, Gm1408, ENSMUSG00000056850, Igkv4-90, Igkv13-89-1, Igkv12-89, Igkv1-88, Igkv13-87, Gm459, Igkv13-85, Igkv13-84, Igkv4-83, Igkv13-82, Gm460, Igkv13-80-1, Igkv4-80, Gm194, EG628498, Igkv4-78, EG667621, Igkv13-76, Igkv4-75, Igkv13-74-1, LOC236047, Igkv13-73-1, EG628516, Gm1499, Igkv13-71-1, Igkv4-71, Gm1502, EG628541, Gm1419, Igkv12-67, Igkv12-66, Igkv4-65, Igkv13-64, EG628571, Igkv13-62-1, EG636752, Igkv13-61-1, Igkv4-61, EG667683, Igkv4-60, Gm1077, Igkv13-57-2, Gm1418, Igkv13-57-1, Gm189, Igkv13-56-1, Igkv4-56, Igkv13-55-1, Gm1524, Igkv13-54-1, Igkv4-54
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-177B22.T7 (MSMg01no177_b22.b1)MSMg01-177B22.TJ (MSMg01no177_b22.g1)
ACCAG371605AG371606
length781814
length of high quality
(start - end)
602 (104 - 705)201 (179 - 379)
definitionCHROMAT_FILE: MSMg01no177_b22.b1 PHD_FILE: MSMg01no177_b22.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:49:37 2005CHROMAT_FILE: MSMg01no177_b22.g1 PHD_FILE: MSMg01no177_b22.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:49:37 2005
singlet/doubletdoubletdoublet
BLAST hitpluralunique
Map location.(68,587,106 - 68,587,576)(68,468,158 - 68,468,358)
sequence
ATTACAAAATTTTCTTTTCCGCAAAAATACCTCGAGAGAAAAAAAGGGAG
GGGGGNTGTCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXCGCGGAATTCCACTTATCTATTATTCACTTTTCCTCTTTCATATCAA
TAATGCTCTATCTCCCCTACTTAGAGTCTTTCTATCATGTCTCTACTGTA
ATGGTCCTTTTTCATTTCCTGGACTCAACAAATACTACAGATTAAGCATA
AAACAATAAAGTTAACCTTAAAAATAATCTTTTCTAACTACATTTAACTA
CTTCTATTTACCTGGAAATTTTACAATTTTATATTTCTTCATATACATAT
GGAATTTTTAAAACATAAAGTAGAAGCCGGGTAGTGATCCCACATGCTTT
AATCCCAGCACTTGGGAGGCAGAGGCAGGTGAATTTCTGAGTTCGAGGAC
AGCCTGGTCTACAGAGTGACCTCCAGGACAGCAAGGACAACACAGAGAAA
CCCTGTCTCAGAAAACCAAAACCAAACCAAACCAAACCAACCAAACAAAC
AAACAAAACCCAAAAAACAAAAAAACCCAAAAAACCCAAAAACAAACAAA
CAAACAAAAACATAATGAAGAGGAAGTAATGTTGTTTTGAGGAAACTTAC
AACAAGTGAAAATAATCGTATTAATTGAATTAAGCAGATATTATATGACA
ACTATCACATGGGTTATATATAGATACATATTATCATATGTGTACATATG
ACATGATTGAGATATGAACTATTCTATAGAN
AAAAATCAAAATGAGGGTTAAAAAGAGAAAAACCCCGGGGTGACTGGGTG
GCTATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXAAATATTTGTGTTAAAGGATGTA
CAAACATTTCTGCACTGTAGCTTGATTGGAGCCTATGACCCACATGCAGA
CAGCAAGGCTGCTTACTGAATCAGTATAATTCCCCCAGTTACTGCTCAAG
AATCAAATGTGAAAATACCAAAGTTTCCTATAGTAGCACTCAATTGTATC
AACCCCAGTCAAACTTTATGAACTATGGGAAATAATAGAAAATTATAGAA
GACAGAAAAATATGGAGGATCCCCAACTGAGCAACAAAAGGAGGACACAT
TTAGCCTCTAAGTATGAAAGGACCACCATCTTTACATGAAATCAGAACTC
CAAGTGACACAGGCTGCTCAAATCAAGGATTTATATGTACATGTGCTGCG
TATTTCCCCTTTGAACTCTAGCCAGCAAAGTTAAAGCTCGCAGATCTTCT
GTTTTACTTAAGTGAATATGATGATGACGAAGTGATTTCAAGAAATATCT
ACTTAAAAGTGTTTGACAAGGGGGAATTCATACTAGTTGATAATATGCGA
TGAATGATTAAAAAAAAAGGGCTTAAACGTGGAAATAGGGCACAACAACC
GGGTTAAAAATGTCGCTAGAACCGTGGTTTCAAACTTGGAANACCCAAAG
GCTAAAAATTGCCTCTTGCCAAAATTGTAGTAAACGCGGAGCATAAACAA
TTGTTTGCATATTN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no177_b22.b1 MSMg01no177_b22.b1 CHROMAT_FILE:
MSMg01no177_b22.b1 PHD_FILE: MSMg01no177_b22.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:49:37 2005
         (602 letters)



>mm_chr6_68587106_68588107
          Length = 1002

 Score =  833 bits (431), Expect = 0.0
 Identities = 461/471 (97%)
 Strand = Plus / Minus

                                                                       
Query: 5   gaattccacttatctattattcacttttcctctttcatatcaataatgctctatctcccc 64
           ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 471 gaattccccttatctattattcacttttcctctttcatatcaataatgctctatctcccc 412

                                                                       
Query: 65  tacttagagtctttctatcatgtctctactgtaatggtcctttttcatttcctggactca 124
           ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 411 tacttagagtctttctatcatgtctctactgtaatggtcctttgtcatttcctggactca 352

                                                                       
Query: 125 acaaatactacagattaagcataaaacaataaagttaaccttaaaaataatcttttctaa 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 351 acaaatactacagattaagcataaaacaataaagttaaccttaaaaataatcttttctaa 292

                                                                       
Query: 185 ctacatttaactacttctatttacctggaaattttacaattttatatttcttcatataca 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 291 ctacatttaactacttctatttacctggaaattttacaattttatatttcttcatataca 232

                                                                       
Query: 245 tatggaatttttaaaacataaagtagaagccgggtagtgatcccacatgctttaatccca 304
           || ||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 231 tacggaatttttaaaacataaagtagaagccgggtagtgatcgcacatgctttaatccca 172

                                                                       
Query: 305 gcacttgggaggcagaggcaggtgaatttctgagttcgaggacagcctggtctacagagt 364
           ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 171 gcacttgggaggcagaggcaggtgaatttctgagttcgaggccagcctggtctacagagt 112

                                                                       
Query: 365 gacctccaggacagcaaggacaacacagagaaaccctgtctcagaaaaccaaaaccaaac 424
           ||  ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 111 gagttccaggacagcaagggcaacacagagaaaccctgtctcagaaaaccaaaaccaaac 52

                                                              
Query: 425 caaaccaaaccaaccaaacaaacaaacaaaacccaaaaaacaaaaaaaccc 475
           || |||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 51  cataccaaaccaaacaaacaaacaaacaaaacccaaaaaacaaaaaaaccc 1


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 27
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 602
Length of database: 1002
Length adjustment: 10
Effective length of query: 592
Effective length of database: 992
Effective search space:   587264
Effective search space used:   587264
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
Query= MSMg01no177_b22.g1 MSMg01no177_b22.g1 CHROMAT_FILE:
MSMg01no177_b22.g1 PHD_FILE: MSMg01no177_b22.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:49:37 2005
         (201 letters)



>mm_chr6_68467958_68468558
          Length = 601

 Score =  350 bits (181), Expect = e-101
 Identities = 196/201 (97%)
 Strand = Plus / Plus

                                                                       
Query: 1   gagcctatgacccacatgcagacagcaaggctgcttactgaatcagtataattcccccag 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 gagcctatgacccacatgcagacagcaaggctgcttactgaatcagtataattcccccag 260

                                                                       
Query: 61  ttactgctcaagaatcaaatgtgaaaataccaaagtttcctatagtagcactcaattgta 120
           ||||||||||||||||||||||||||||||| |||||||||||||||| |||||||||||
Sbjct: 261 ttactgctcaagaatcaaatgtgaaaatacccaagtttcctatagtagtactcaattgta 320

                                                                       
Query: 121 tcaaccccagtcaaactttatgaactatgggaaataatagaaaattatagaagacagaaa 180
           |||||||||||||||||||||||||||||||||||||||| |||| |||||||| |||||
Sbjct: 321 tcaaccccagtcaaactttatgaactatgggaaataatagcaaatcatagaagagagaaa 380

                                
Query: 181 aatatggaggatccccaactg 201
           |||||||||||||||||||||
Sbjct: 381 aatatggaggatccccaactg 401


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 8
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 201
Length of database: 601
Length adjustment: 8
Effective length of query: 193
Effective length of database: 593
Effective search space:   114449
Effective search space used:   114449
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)