Query= MSMg01no177_g02.b1 MSMg01no177_g02.b1 CHROMAT_FILE:
MSMg01no177_g02.b1 PHD_FILE: MSMg01no177_g02.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:49:57 2005
(614 letters)
>mm_chr6_39081344_39082363
Length = 1020
Score = 1145 bits (592), Expect = 0.0
Identities = 608/616 (98%), Gaps = 6/616 (0%)
Strand = Plus / Plus
Query: 5 gaattccaggatgtcctgtgtgacaggttgtagcctcccccagccttgagtaggctaact 64
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattccaggatgtcttgtgtgacaggttgtagcctcccccagccttgagtaggctaact 264
Query: 65 ttgacctcgaggccactgagtatgagactacctggggtggagccttcgacttagaaggct 124
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 ttgacctcgaggccactgagtatgagactacctggggtggagccttcgacttagaaggct 324
Query: 125 ctattgttctgtcacctgctgctgctcttctccaggacactgctacctgctgagaggccc 184
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 ctattgttctgtcacctgctgctgctcttctccaggacactgctacctgctgagaggccc 384
Query: 185 ttgaaatattctggagaaagcatccggcagcaggctggcaacaagacatcaagaatggat 244
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 ttgaaatattctggagaaagcatccggcagcaggctggcaacaagacatcaagaatggat 444
Query: 245 tggcaggggatgggcctcccccccctttataagcacagacttgggggccttgaacagaaa 304
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 tggcaggggatgggcctcccccccctttataagcacagacttgggggccttgaacagaaa 504
Query: 305 catgtcttggcctccattctctcaccatttccttccatacagctccggcctcccactcag 364
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 505 catgtcttggcctccattctctcaccatttccttccatacagctccggcctcccactcag 564
Query: 365 gaactcagctagtgtggccacaggcagcttacaacaggtgaaatagtacaaagtgtgcaa 424
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 565 gaactcagctagtgtggccacaggcagcttacaacaggtgaaatagtacaaagtgtgcaa 624
Query: 425 g-aacaacagtagggaacttctagaataagtcagttaaatactattttttttactattat 483
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 625 ggaacaacagtagggaacttctagaataagtcagttaaatactattttttttactattat 684
Query: 484 aaatcatttgcaatttgctttaaaaccaccactgcgaaaaacaaacaaaaaatgctttgg 543
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 685 aaatcatttgcaatttgctttaaaaccaccactgcaaaaaacaaacaaaaaatgctttgg 744
Query: 544 aatttagatat-----tatttataggaatattttttttctgcctgggcagtggtggtgca 598
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 745 aatttagatatattattatttataggaatattttttttctgcctgggcagtggtggtgca 804
Query: 599 tgcctgggtgttaatc 614
||||||||||||||||
Sbjct: 805 tgcctgggtgttaatc 820
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 28
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 614
Length of database: 1020
Length adjustment: 10
Effective length of query: 604
Effective length of database: 1010
Effective search space: 610040
Effective search space used: 610040
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no177_g02.g1 MSMg01no177_g02.g1 CHROMAT_FILE:
MSMg01no177_g02.g1 PHD_FILE: MSMg01no177_g02.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:49:57 2005
(557 letters)
>mm_chr6_39204256_39205212
Length = 957
Score = 949 bits (491), Expect = 0.0
Identities = 503/507 (99%)
Strand = Plus / Minus
Query: 1 agtgatatacctgtctctgcctcctgagccctgggttaaaggcatgcgccaccatgtcag 60
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||| ||
Sbjct: 507 agtgatatacctgtctctgcctcctgagccctgggttaaaggcatgtgccaccatgttag 448
Query: 61 gcttcccctaccactgggtctcatgtaactcaatatacagccaatatgaccttaaactgt 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 447 gcttcccctaccactgggtctcatgtaactcaatatacagccaatatgaccttaaactgt 388
Query: 121 tcctactcccactcccctatgttgggattacattcctgctataccccacctggctgatgc 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 387 tcctactcccactcccctatgttgggattacattcctgctataccccacctggctgatgc 328
Query: 181 cttacacttttaacagtgttatgagttgattgtgtccttccacgtttgtatattgaagtc 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 327 cttacacttttaacagtgttatgagttgattgtgtccttccacgtttgtatattgaagtc 268
Query: 241 tgtcttagggtttactgctgcgaacagacactatgaccaaagcatttcttataacaacaa 300
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 267 tgtcttagggtttactgctgcgaacagacactatgaccaaagcatttcttataagaacaa 208
Query: 301 catttaattggggctgacttacaggttcagaggttcagtccattatcatcaaggtgagag 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 207 catttaattggggctgacttacaggttcagaggttcagtccattatcatcaaggtgagag 148
Query: 361 catggcagcatccaggcaggcacggtgctagaggaactgagagttctacatcttcctttg 420
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 147 catggcagcatccaggcaggcacggtgctggaggaactgagagttctacatcttcctttg 88
Query: 421 aaggctgctagaagactggcttccaggatagctagggtgaggtcttaaagcccatgccca 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 87 aaggctgctagaagactggcttccaggatagctagggtgaggtcttaaagcccatgccca 28
Query: 481 cagtgacacacctactccatcgaggcc 507
|||||||||||||||||||||||||||
Sbjct: 27 cagtgacacacctactccatcgaggcc 1
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 26
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 557
Length of database: 957
Length adjustment: 10
Effective length of query: 547
Effective length of database: 947
Effective search space: 518009
Effective search space used: 518009
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
