BAC Information

Click to search

BAC

Clone NameMSMg01-178C08
Chromosome6 (Build37)
Map Location 132,995,344 - 132,995,590
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC639802, EG114600, Prb1, LOC631126, LOC100043878, Prpmp5, EG667929, EG381818, Prh1, Prp2, A630073D07Rik, Tas2r120, Tas2r121, Tas2r122, Tas2r115, Tas2r124, Tas2r102, Tas2r136, Tas2r145-ps3, Tas2r117, Tas2r111-ps2, Tas2r123, Tas2r116, Tas2r110, Tas2r113, Tas2r142-ps5, Tas2r125, Tas2r146-ps1, Tas2r129, Tas2r131, Tas2r109, EG667992
Downstream geneLOC100043634, Tas2r140, LOC668002, Tas2r141-ps4, 2700089E24Rik, LOC630618, 5530400C23Rik, EG545884, EG626372, LOC100043649, LOC100043653, EG545886, LOC622962, Kap, LOC100043655, LOC100043656, LOC668063, Etv6
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-178C08.T7 (MSMg01no178_c08.b1)MSMg01-178C08.TJ (MSMg01no178_c08.g1)
ACCAG372319AG372320
length870706
length of high quality
(start - end)
---285 (77 - 361)
definitionCHROMAT_FILE: MSMg01no178_c08.b1 PHD_FILE: MSMg01no178_c08.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:50:52 2005CHROMAT_FILE: MSMg01no178_c08.g1 PHD_FILE: MSMg01no178_c08.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:50:52 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
ACTTCAATTTTTCCCTTTTTTCTTTCATATTTAACCTATTTTTTTTTTTC
TTCCCCCCCCGCGCTTCATAAAATAAAATTGTGGCGGGGCCCCGGCCCTT
AAAATTAACGGNAAACCTTTCAAAAACCCCTTTAAAAATTTTTAAGGGGG
CGGGGGGGTGGGGTCCACGGGAGGGGAATTTTAAAAGGAGGGGGGGGGGT
TTTCTTTCAAAAAAATATATTTTCACTCCTCCCCCCCGGGGGGGGGGTTT
TCTGCGGGGGGGGTGTTTGCTTTTTTTTTTTTAAAAAAATTTTCCGGCCC
CTTTTCCTTGGCTCCCCCAATTAAGGGTTCTGAAACTTTTTCCTTTTGGG
GGTTCCCTTTTGGGGGTTTAAAAATTTTTCCCCCCCCCCCCCCCCTTTTA
AAGGAGCCCCCCCTTTCCCCCTAAATTTTTCCCCCCCTTTCAGAAAGGTG
GGGGGGTTTTTATAAACCCCGGGGGGTCTTTTTTTCCGGGCCCCTAAAAA
AAAAACTTTTAAAAACCCTTGGGAGAGGGGGCCCCCCCCCCCCCCCTTTT
TTTTTTCCCCCTTCCCCGGGGGGTTTCCCCCACAGGGGAGGGGGTTTTTG
GGGGAGTTTTTTCCCTTTTGTCGTAACATCCGTGGGGGAAAAAAACGGGG
GGGGTCCCCCGGGGGGGGGGCGGGGGGGGGGAAAAAATTGGGGGGGGGGG
GACCCCCCCGCGGAATATTTCCCCGTGGGGTTTATAATGGAAAAAACCTC
TTTTATTATTCTCCCTTGGGGGGTGGGGGGGGAGAAATCCCCCGGGGGGG
GGTTTTTATCCCCCCCCCCCCCCACAGAAAAAAAAAAAGATTGCGTCCCC
GGAGGAGGTTTTTTTTTTTN
CCATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXTCGTTTGCTCAAATGCAAATAAAG
GTTTTTTCTTTTCCACTGCTTTGCATAATTTTGCCTTATCAATACTCTGT
CTAATTTGAATTTATCAAGTTTACATGCCAGCTAGTAAAATTTAAAACCT
AATGACATCCCAATGGAAAAATCAAAACATGCAAAACTGTGACCAATTCT
GTTTTTTAATAAGTTGTTATATCAGACATGCTATAATAAAAAATTCTTCC
TTAAATTATAGTAACTGTAACATATGCAAACTATTTTCAATATCTTAGAT
AAGCAAAATTATTATAATCTGTCAAAATTTTTAAGACAAATTATAGGATT
GCTTTTTGTGTGAAAAAACCACAACAATTGTTGTATCTAGCACTTCCCAA
GTATTTGTGCTTTCTTCAGAAAACAGAATACAAACACATAAATTATCTAA
AAAAGAAACTTTATTCTTTTCATACCAAATAAAACCTATCAAGTATGATA
AAACTTTTTCAAATTATAGATATTTCTGAAGACTCAATAAAAAATTAACT
TTCAAATTCCAGGCGTTTCACAAATATTAATGGGAGTAATTTTTACATGT
TATAATTAAAAAACATTTTTGAAAAATTAGGTAAATAAATAATTCTATAC
TGTTAN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no178_c08.g1 MSMg01no178_c08.g1 CHROMAT_FILE:
MSMg01no178_c08.g1 PHD_FILE: MSMg01no178_c08.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:50:52 2005
         (285 letters)



>mm_chr6_132995107_132995790
          Length = 684

 Score =  427 bits (221), Expect = e-124
 Identities = 242/249 (97%), Gaps = 3/249 (1%)
 Strand = Plus / Plus

                                                                       
Query: 38  cactgctttgcataattttgccttatcaatactctgtctaatttgaatttatcaagttta 97
           ||||||||||||||| |||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 238 cactgctttgcataa-tttgccttatcaattctctgtctaatttgaatttatcaagttta 296

                                                                       
Query: 98  catgccagctagtaaaatttaaaacctaatgacatcccaatggaaaaatcaaaacatgca 157
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 297 catgccagctagtaaaatttaaaacctaatgacatcccaatggaaaaatcaaaacatgca 356

                                                                       
Query: 158 aaactgtgaccaattctgttttttaataagttgttatatcagacatgctataataaaaaa 217
           ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 357 aaactgtgaccaattctgttttt-aataagttgttatatcagacatgctataataaaaaa 415

                                                                       
Query: 218 t-tcttccttaaattatagtaactgtaacatatgcaaactattttcaatatcttagataa 276
           | |||||||||||||||||||| |||||||||||||||||||||||| ||||||||||||
Sbjct: 416 tatcttccttaaattatagtaattgtaacatatgcaaactattttcattatcttagataa 475

                    
Query: 277 gcaaaatta 285
           ||| |||||
Sbjct: 476 gcagaatta 484


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 11
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 285
Length of database: 684
Length adjustment: 9
Effective length of query: 276
Effective length of database: 675
Effective search space:   186300
Effective search space used:   186300
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)