Query= MSMg01no178_f08.b1 MSMg01no178_f08.b1 CHROMAT_FILE:
MSMg01no178_f08.b1 PHD_FILE: MSMg01no178_f08.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:51:06 2005
(673 letters)
>mm_chr6_93015524_93016593
Length = 1070
Score = 1205 bits (623), Expect = 0.0
Identities = 657/669 (98%), Gaps = 3/669 (0%)
Strand = Plus / Plus
Query: 5 gaattcaaggtgcagcttgccttttttttttctctctttccttaaagcaagaaaagctta 64
||||||||||||||| |||||||||||||| ||||||| ||||||||||||||||||||
Sbjct: 205 gaattcaaggtgcagtttgccttttttttt--tctctttacttaaagcaagaaaagctta 262
Query: 65 gcagtgaaactcattttccatgactcccaaatggtttcacaataaatctgtgaacttaat 124
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 263 gcagtgaaactcattttccatgactcccaaatggtttcacaataaatctgtgaacttaat 322
Query: 125 cagcttcttctgttgaggaaacctcctctaattgtgttcttgtgtgaaatagacacgatg 184
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 323 cagcttcttctgttgaggaaacctcctctaattgtgttcttgtgtgaaatagacacgatg 382
Query: 185 acaaaaaatactccagctctgcaaagaaagtgtggatcaccgtaatctggggaataacag 244
||||||||||||||| |||| ||||||||||||||||||| |||||||||||||||||||
Sbjct: 383 acaaaaaatactccaactct-caaagaaagtgtggatcactgtaatctggggaataacag 441
Query: 245 tctcagtgtccggtgaagaggagccaagatcgtgctgtctctggtagtatttctcttcta 304
||||||||||| |||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 442 tctcagtgtccagtgaagaggagccaagatcgtgctgtctctggtagtatttcttttcta 501
Query: 305 gataattgtcaggctcttctttcttggtcaacagtaagacaacgaatatcctgaattaag 364
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 502 gataattgtcaggctcttctttcttggtcaacagtatgacaacgaatatcctgaattaag 561
Query: 365 tgtctctgggacataatggtgtagtaactaggagcactgccaactagatttctagaaatt 424
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 562 tgtctctgggacataatggtgtagtaactaggagcactgccaactagatttctagaaatt 621
Query: 425 cccacaagactcctgcagagccacaaggcactataacagcaaatgaacacagagatgaaa 484
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 622 cccacaagactcctgcagagccacaaggcactataacagcaaatgaacacagagatgaaa 681
Query: 485 cacagaacctgaacgctttgctttcatctcttttcctggtctctagaagccaatgcctgt 544
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 682 cacagaacctgaacgccttgctttcatctcttttcctggtctctagaagccaatgcctgt 741
Query: 545 ctttctttccctttcctccatgccaagtatggcgggtgcagaggggacatgcccggaatg 604
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 742 ctttctttccctttcctccatgccaagtatggcgggtgcagaggggacatgcccggaatg 801
Query: 605 ttagcacagctgcttactgtcagctagcaaagcaatctggtggaaagaagacaacaagga 664
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 802 ttagcacagctgattactgtcagctagcaaagcaatctggtggaaagaagacaacaagga 861
Query: 665 ctccgtgcg 673
|||||||||
Sbjct: 862 ctccgtgcg 870
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 32
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 673
Length of database: 1070
Length adjustment: 10
Effective length of query: 663
Effective length of database: 1060
Effective search space: 702780
Effective search space used: 702780
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no178_f08.g1 MSMg01no178_f08.g1 CHROMAT_FILE:
MSMg01no178_f08.g1 PHD_FILE: MSMg01no178_f08.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:51:07 2005
(282 letters)
>mm_chr6_93091740_93092422
Length = 683
Score = 532 bits (275), Expect = e-155
Identities = 281/283 (99%), Gaps = 1/283 (0%)
Strand = Plus / Minus
Query: 1 tatttctggaaagagtgc-atgggtactcagcttaatgatgttcaacaaagcccttgttt 59
||||||| |||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 483 tatttctagaaagagtgcaatgggtactcagcttaatgatgttcaacaaagcccttgttt 424
Query: 60 gaggacctttggatatatagttgctgagatagcctttttagaagcatttagcatttataa 119
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 423 gaggacctttggatatatagttgctgagatagcctttttagaagcatttagcatttataa 364
Query: 120 tgattctactattcctattggactggggtcagggggtcagggtgaaattaagaataccaa 179
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 363 tgattctactattcctattggactggggtcagggggtcagggtgaaattaagaataccaa 304
Query: 180 ggtgatgtggctttagtttaaggttataaatcttacaaatctgattttacttcccagctt 239
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 303 ggtgatgtggctttagtttaaggttataaatcttacaaatctgattttacttcccagctt 244
Query: 240 ggttacttcctggttgttttggacaagttacacaccttcataa 282
|||||||||||||||||||||||||||||||||||||||||||
Sbjct: 243 ggttacttcctggttgttttggacaagttacacaccttcataa 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 12
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 282
Length of database: 683
Length adjustment: 9
Effective length of query: 273
Effective length of database: 674
Effective search space: 184002
Effective search space used: 184002
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
|
