BAC Information

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BAC

Clone NameMSMg01-178H05
Chromosome6 (Build37)
Map Location 125,139,649 - 125,139,883
singlet/doubletsinglet
Overlap geneNcapd2
Upstream geneVmn2r27, LOC623374, EG622297, Cd163, LOC100043530, 1700013D24Rik, 1700027F06Rik, 1700060L04Rik, Pex5, Clstn3, C1rl, C1r, C1s, LOC667277, EG317677, Mboat5, Emg1, Phb2, Ptpn6, Grcc10, Atn1, Eno2, Lrrc23, Spsb2, Tpi1, Usp5, Cdca3, Gnb3, Leprel2, Gpr162, Cd4, Lag3, Ptms, Mlf2, EG667343, Cops7a, C530028O21Rik, Zfp384, Ing4, Acrbp, Gpr92, Chd4, Nol1, A930037G23Rik, Gapdh
Downstream geneMrpl51, Vamp1, Tapbpl, Cd27, 4930417O13Rik, Tuba3a, Ltbr, Scnn1a, Tnfrsf1a, Plekhg6, Cd9, Vwf, Tmem16b, Ntf3, LOC100043565
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-178H05.T7 (MSMg01no178_h05.b1)MSMg01-178H05.TJ (MSMg01no178_h05.g1)
ACCAG372531AG372532
length726761
length of high quality
(start - end)
560 (46 - 605)274 (77 - 350)
definitionCHROMAT_FILE: MSMg01no178_h05.b1 PHD_FILE: MSMg01no178_h05.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:51:15 2005CHROMAT_FILE: MSMg01no178_h05.g1 PHD_FILE: MSMg01no178_h05.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:51:15 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
TCAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGG
AATTCAGGGCACACACAGGACTGGACTTAGCCTCCCTAGGTGCCACGGTC
AGATGCCGGACATGGATTTATATATAAATATATATATATAAATATATATA
TATATACCTGCTCATCACGGCCATCTTTGTTGTAACCATTTCTGTGTTTA
TAAATGCATTATCTCTGAGAATTTTCATATTGATGTTTTATTTTTGTCTT
TTTTTTTTTTCTCCACCTTGTCCTCTGGCCATGGCATTTTAATTTTCTTT
TGACTTTTAATTTTTTTAATCATGGGAGATTTCAGATAAAATAATCAGGA
ATTATACAGTTGTTATAAAGCAATTTAAAAATGAAAATCTTATGTACAAA
CTAAGGGGTGTTTTTACACCATTGTATAGAAATAAATTCATGTTTAAGGA
TGAGAGGCAGTGAGCTACTGTGTAAGCTAGCGTGGGGAAGGCTATCTGGG
GAGCTCTCCAGGCCAGCAGGAAGAATTTAGACTGGAGAGGGTGAAGAACA
GATGCTAGGCTCATAAGCCACCGGATGTGTTATTCCGAAGCCATTGCCAG
TTTAGGAACAGTTGTATACATGTCCTATCGTGGGACTGCCTACATAGGTG
AGACAAGGTTACATTTAACAAAATGGCTATATTCTTTCCCCTTTGCCCCC
CCACACCCCAAAAATAAAAAAAGCCA
TCATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXCACTTGCCCTTATCTCCAGAGGAG
CTGCTGAAAAGTGGAGGTGTGCACATCAGTACGTTGTCCAGGAGGTGCTG
CCCATCAAGCACCTCTCATCCCAGCTTAGAGGTGAGAGACTCCATGGAAC
TTCAGAAGACAGCCCTATGCAATGATGTTATCCTTTCTGTTCTACAGCCC
CGGGACACTCCATCTGGGCCAGGGAGGTCTTTCCTAGTCCCTGCCTTTAG
TTGTTTGTTGTCCCATGGTTGGTTGGTTGGTTGGTTGGTTGGTTTATTTN
AANNATTTTTTTTTTTCCCCCCCCCCCCCCCCCCTCTCTTTTTTCAATAT
AACCTTCTTTTTCCCCCCCCAGAAAAAAAAAACTACTCTTTTTGGGGGGC
GGGTTGGTTAGGACCTCCACCCTGCCATTAATGATGCCCTCTAATGTCTT
GAATGCTGTGAAACGTTCCCTCTGTCCAAATGTTAGCAATAACTAAATCT
CTGTCAAATTTTTCGAACCTTCCACTTTTCGCTCTAGTCGTGGTATAGAT
TGGGTTCGGTATCTTCTCGTTTCGTTTGTTTCTGGAGTTGCTTTTAAGGA
TGAGGGTTCTTTTTCCTTTGATCCGAAAGGTCCTGCTATGTTGGCGATAT
GTGATGTGTAACACGGCACAACTGTTTTCTCTTATAAATATTTTTTGTAT
ATTGTGTATTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no178_h05.g1 MSMg01no178_h05.g1 CHROMAT_FILE:
MSMg01no178_h05.g1 PHD_FILE: MSMg01no178_h05.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:51:15 2005
         (274 letters)



>mm_chr6_125139566_125140237
          Length = 672

 Score =  371 bits (192), Expect = e-107
 Identities = 232/260 (89%), Gaps = 25/260 (9%)
 Strand = Plus / Minus

                                                                       
Query: 1   cacttgcccttatctccagaggagctgctgaaaagtggaggtgtgcacatcagtacgttg 60
           ||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||
Sbjct: 318 cacttgcccttatctccagaggagctgctgaaaagtggaggtgtg-a-atcagtacgttg 261

                                                                       
Query: 61  tccaggaggtgctgcccatcaagcacctctcatcccagcttagaggtgagagactccatg 120
           ||| ||||||||||||| |||||||||||||||||||||||||||||||||||||||   
Sbjct: 260 tccgggaggtgctgcccgtcaagcacctctcatcccagcttagaggtgagagactcc--- 204

                                                                       
Query: 121 gaacttcagaagacagccctatgcaatgatgttatcctttctgttctacagccccgggac 180
                               ||||||||||||||||||||||||||||||||||||||||
Sbjct: 203 --------------------atgcaatgatgttatcctttctgttctacagccccgggac 164

                                                                       
Query: 181 actccatctgggccagggaggtctttcctagtccctgcctttagttgtttgttgtcccat 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 163 actccatctgggccagggaggtctttcctagtccctgcctttagttgtttgttgtcccat 104

                               
Query: 241 ggttggttggttggttggtt 260
            |||||||||||||||||||
Sbjct: 103 agttggttggttggttggtt 84


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 16
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 274
Length of database: 672
Length adjustment: 9
Effective length of query: 265
Effective length of database: 663
Effective search space:   175695
Effective search space used:   175695
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)