BAC Information

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BAC

Clone NameMSMg01-178H20
Chromosome6 (Build37)
Map Location 129,315,768 - 129,466,918
singlet/doubletdoublet
Overlap gene4933425B16Rik, Clec1b, Clec9a, Clec1a, Clec7a, Olr1, D630042F21Rik
Upstream geneFoxm1, Nrip2, Itfg2, Fkbp4, EG667598, Pzp, LOC384494, EG667610, BC048546, Klrb1a, EG545878, LOC677440, Clec2h, LOC100043863, LOC100043861, Klrb1c, LOC100043862, Klrb1d, LOC667706, Clec2i, Clec2g, LOC667715, BC064078, Clec2f, Klrb1f, Clec2e, Klrb1-ps1, Clec2d, Cd69, 4922502D21Rik, Clec12a
Downstream geneGabarapl1, Klre1, Klrd1, Klrk1, Klrc3, Klrc2, Klrc1, LOC640755, Klri1, Klri2, Gm156, Klra17, Klra5, LOC667764, Klra6, LOC100038893, LOC100038894, LOC100038895, Klra4, LOC667769, LOC100038897, Klra8, EG654449, Klra9, Klra7, LOC100038898, Klra12, Klra10, Klra13, Klra3, Klra1, LOC100038902, LOC100038903, LOC625436, EG625473
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-178H20.T7 (MSMg01no178_h20.b1)MSMg01-178H20.TJ (MSMg01no178_h20.g1)
ACCAG372558AG372559
length736737
length of high quality
(start - end)		479 (68 - 546)566 (76 - 641)
definitionCHROMAT_FILE: MSMg01no178_h20.b1 PHD_FILE: MSMg01no178_h20.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:51:18 2005CHROMAT_FILE: MSMg01no178_h20.g1 PHD_FILE: MSMg01no178_h20.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:51:18 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(129,315,768 - 129,316,245)(129,466,355 - 129,466,918)
sequence
CTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGG
AATTCAGAAGATTAACATTCCCTTATACTAGTAGCTAAGATGCTCTTTGC
TGAAATCTATGAGACTATTGACACTTGGTTCCAGGTGAAAGTAATGTATA
AACATTTGTCACTGTGTATAGTGGTAATGCATTGAAACTGAATCTTAACA
CTTTCAAATCTAGACTTTTGAATTTGTTCCCTAAAACAATTGTTAGTGCT
AGATGCTGCACAATTATGGTAGGAATAAATAGTTTGGTAGAAGATCTGTA
GTGAAATAGACTCCGGACACCCAGAATACTGACCAAGAAAAGCTTCAAGA
GGCTAAGAGGAACCAGTTTTTTCCCTGGAAGCATACTGCCCTCTAGTGGT
GGCACAGAAGAACTTCCCCCTGGCGTCTTATTAAAGGGAGCCTTTAGTTG
AAATAAAACCACCACAGGTTTAACTCTGCTGGAAATAGACCTGGTCTCCA
CCGGCAGCGCCCCTGCACCGCGTCTATCCAATCCTATTTACTGTGTAAGG
CATTGAAAGATACTCAACCAAGCAGGGTAGTGCACAACTGTAATCTTATA
ACTCACGATCTAGCTGAGTGCATGTTTACAGCCTGATTTCTGGTCATTTC
TTTTTGTACCATCGATTAATATTACACCTCACCTGTTTTTCACAACATTC
AAATCTCTCTTTCCTGTTGTAATAAATAAATCAGCG

CCAATGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXAGGCATCAGTGACAGCCTAGGTCAC
GACATTCTGGAAATGAAAACCACACCGAGTTCCCAAACGCAATGCTAGTC
GGCAGGTTGCCCTACATGCACCGCCAAACCTTTTAGTACATCTTCAAACC
TGACCCCCTATCTTAGTGTTCTGAGTCCACTCACATGTAATGGTGCTCTG
GAGAGTGCTGTCATGGTCAAAAGCAATGACAGTCACTTCATAAGGCGGCG
GGGCCCCATCTTCCCCGTTTTCTGGACGGCTCAGGCAGCAGCGGAAGCAT
ACTGAAGTCAGGCCACACAGGAGAAGCAGTGCGCCAACCACCACCAGTAA
CCTGCAAGAGCCCACACACAAATCCAACCTGTGGTCAACTGGTTTCCCAG
CTCTGACCTAACCATACTTTAATCTCCAATCACGATCGTTGTTCTTCTTT
TAGAGAACACTAATAAGGCTTCAACCGTGAGGGTTTCATTTTGCATATAT
CAGTTATTGATTTTTCAGCAAGACTATGCCGGTCAGGAGAGCAAACAACA
CTGAAGATAGTTTGAAGGGGCTGATTCTTACTTCACTGTGAAGAAGTGTT
TCTTAAGCACATTCTGGGGAGAGGCACTAAAATCTTTTGTCGTTGGCTGA
AGGGACTGTATTGAAATAAGAAAACGTGTCGTATTGG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no178_h20.b1 MSMg01no178_h20.b1 CHROMAT_FILE:
MSMg01no178_h20.b1 PHD_FILE: MSMg01no178_h20.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:51:18 2005
         (479 letters)



>mm_chr6_129315568_129316446
          Length = 879

 Score =  816 bits (422), Expect = 0.0
 Identities = 464/478 (97%)
 Strand = Plus / Plus

                                                                       
Query: 1   ttcccttatactagtagctaagatgctctttgctgaaatctatgagactattgacacttg 60
           ||||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 ttcccttatactactagataagatgctctttgctgaaatctatgagactattgacacttg 260

                                                                       
Query: 61  gttccaggtgaaagtaatgtataaacatttgtcactgtgtatagtggtaatgcattgaaa 120
           ||||||||||||| |||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 261 gttccaggtgaaaataatgtataaacatttgtcactgtgtatagtgttaatgcattgaaa 320

                                                                       
Query: 121 ctgaatcttaacactttcaaatctagacttttgaatttgttccctaaaacaattgttagt 180
           |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 321 ctgaatcttaacactttcaaatctagacttttgaatttgttcgctaaaacaattgttagt 380

                                                                       
Query: 181 gctagatgctgcacaattatggtaggaataaatagtttggtagaagatctgtagtgaaat 240
           ||||| ||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 381 gctagctgctgcacaattatggtagtaataaatagtttggtagaagatctgtagtgaaat 440

                                                                       
Query: 241 agactccggacacccagaatactgaccaagaaaagcttcaagaggctaagaggaaccagt 300
           ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 agactccggacacacagaatactgaccaagaaaagcttcaagaggctaagaggaaccagt 500

                                                                       
Query: 301 tttttccctggaagcatactgccctctagtggtggcacagaagaacttccccctggcgtc 360
           |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 501 tttttccctggaagcatactgccctctagtggtggcacagaagaactttcccctggcgtc 560

                                                                       
Query: 361 ttattaaagggagcctttagttgaaataaaaccaccacaggtttaactctgctggaaata 420
           ||| |||||||||||||||||||||||||||||||||||||| |||||||| ||||||||
Sbjct: 561 ttaataaagggagcctttagttgaaataaaaccaccacaggtctaactctgatggaaata 620

                                                                     
Query: 421 gacctggtctccaccggcagcgcccctgcaccgcgtctatccaatcctatttactgtg 478
           ||||||||||||||||||||||||||||||||| ||| ||||||||||||||||||||
Sbjct: 621 gacctggtctccaccggcagcgcccctgcaccgtgtccatccaatcctatttactgtg 678


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 14
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 479
Length of database: 879
Length adjustment: 10
Effective length of query: 469
Effective length of database: 869
Effective search space:   407561
Effective search space used:   407561
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no178_h20.g1 MSMg01no178_h20.g1 CHROMAT_FILE:
MSMg01no178_h20.g1 PHD_FILE: MSMg01no178_h20.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:51:18 2005
         (566 letters)



>mm_chr6_129466155_129467120
          Length = 966

 Score = 1075 bits (556), Expect = 0.0
 Identities = 562/564 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   aggcatcagtgacagcctaggtcacgacattctggaaatgaaaaccacaccgagttccca 60
           ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 764 aggcatcagtgacagcctaggtcaccacattctggaaatgaaaaccacaccgagttccca 705

                                                                       
Query: 61  aacgcaatgctagtcggcaggttgccctacatgcaccgccaaaccttttagtacatcttc 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 704 aacgcaatgctagtcggcaggttgccctacatgcaccgccaaaccttttagtacatcttc 645

                                                                       
Query: 121 aaacctgaccccctatcttagtgttctgagtccactcacatgtaatggtgctctggagag 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 644 aaacctgaccccctatcttagtgttctgagtccactcacatgtaatggtgctctggagag 585

                                                                       
Query: 181 tgctgtcatggtcaaaagcaatgacagtcacttcataaggcggcggggccccatcttccc 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 584 tgctgtcatggtcaaaagcaatgacagtcacttcataaggcggcggggccccatcttccc 525

                                                                       
Query: 241 cgttttctggacggctcaggcagcagcggaagcatactgaagtcaggccacacaggagaa 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 524 cgttttctggacggctcaggcagcagcggaagcatactgaagtcaggccacacaggagaa 465

                                                                       
Query: 301 gcagtgcgccaaccaccaccagtaacctgcaagagcccacacacaaatccaacctgtggt 360
           |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 464 gcagtgcgccaaccaccaccagcaacctgcaagagcccacacacaaatccaacctgtggt 405

                                                                       
Query: 361 caactggtttcccagctctgacctaaccatactttaatctccaatcacgatcgttgttct 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 404 caactggtttcccagctctgacctaaccatactttaatctccaatcacgatcgttgttct 345

                                                                       
Query: 421 tcttttagagaacactaataaggcttcaaccgtgagggtttcattttgcatatatcagtt 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 344 tcttttagagaacactaataaggcttcaaccgtgagggtttcattttgcatatatcagtt 285

                                                                       
Query: 481 attgatttttcagcaagactatgccggtcaggagagcaaacaacactgaagatagtttga 540
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 284 attgatttttcagcaagactatgccggtcaggagagcaaacaacactgaagatagtttga 225

                                   
Query: 541 aggggctgattcttacttcactgt 564
           ||||||||||||||||||||||||
Sbjct: 224 aggggctgattcttacttcactgt 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 25
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 566
Length of database: 966
Length adjustment: 10
Effective length of query: 556
Effective length of database: 956
Effective search space:   531536
Effective search space used:   531536
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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