CTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGG
AATTCCACAGGCCTTAGAGCGAGCTCACAGAGTGTGTTGGCTTGCAGTGC
CAGCAGTCCTAACCATGTGCAGACTCAGAATCAGAAGGCAGTTAGCCTGA
AAGGTACTTAGGCAAGAGGTGCTTAATCAGACAGTGCTTATTCCACTCTG
TGACAGGCTCTCTCCACTGAGCACAGGGGACCTGAGTCACAAGCCCTTGT
CTCTTGTTGGCAATTCATACACCAAGTAGCCCTGTTAACAGTTGACTTTG
CAGCTCTCTCTGACGACACTGCAGTTCTATCTCAGCAGAACTGTCTGTAA
CTCCAGTTCAAGAGGGTCTTACACCCTCTTAATACCTCTTCAGGCAATAT
ACACACAAGGAGCACATGCATACATGCAAGCAAAACACCATACAAGAAAC
AGCTATACTAAGACATACAGTTTCATTTAGTGCCAAGCAGTGGCCCTTGG
AAGCAGTAATGAACATAAGACCTAGTGGATCCATTTTAACACTGGAGAAC
CCATTACCTGGCTTCCTTTAAGAACAGAAGTTCTATCGTATGCTACCTTT
AAAAGATAGTAATTATTTTACTTGTCTTAAAATGTATGAAGATTTAAAAT
TCCTTCAATCCAAAATTTGTTTCTAGAAAATATTCCCTTTTAAGGACATC
TGT

CGATGACXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXTCACCTGAGGAATACCGAATGGCAG
AGAAGCACCTGAAAAAATGTTCAACATCCTTAATCATCAGGGAAATGCAA
ATCAAAACAACCCTGAGATTCCACCTCACACCAGTCAGAATGTCTAAGAC
CAAAAATTCAGGTGACAGCAGATGCTGGCGAGGATGTGGAGAAAGAGGAA
CACTCCTCCATTGTTGGTGGGATTGCAGGCTTGTACAACCACTCTGGAAA
TCCGTCTGGCGGCTCCTCAGAAAGTTGGACATAGTACTACCGGAGGATCC
AGCAATACCTCTCCTGGGCATATATCCAGAAGATGCCCCAACTGGTAAGA
AGGACACATGCTCCACTATGTTCATAGCAGCCTTATTTATAATAGCCAGA
AGCTGGAAAGAACCCAGATGCCCCTCAACAGATGAATGGATACAGAAAAT
GTGGTACATCTACACAATGGAGTACTACTCAGTTATTAAAAAGAATTAAT
TTATGAACTTCCTAGCCAAATGGATGGACCTGGAGGGCATCATCCTGAGT
GAGGTAACACATTCACAAAGGAACTCACACAATATGTACTCACTGATAAG
TGGATATTAGCCCAAAACCTAGGATACCCAAGATATAAGATACAATTTTC
TAN

Query= MSMg01no178_l13.b1 MSMg01no178_l13.b1 CHROMAT_FILE:
MSMg01no178_l13.b1 PHD_FILE: MSMg01no178_l13.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:51:35 2005
         (658 letters)



>mm_chr6_43724539_43725596
          Length = 1058

 Score = 1218 bits (630), Expect = 0.0
 Identities = 648/654 (99%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattccacaggccttagagcgagctcacagagtgtgttggcttgcagtgccagcagtcc 64
           ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattccacaggctttagagcgagctcacagagtgtgttggcttgcagtgccagcagtcc 264

                                                                       
Query: 65  taaccatgtgcagactcagaatcagaaggcagttagcctgaaaggtacttaggcaagagg 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 taaccatgtgcagactcagaatcagaaggcagttagcctgaaaggtacttaggcaagagg 324

                                                                       
Query: 125 tgcttaatcagacagtgcttattccactctgtgacaggctctctccactgagcacagggg 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 tgcttaatcagacagtgcttattccactctgtgacaggctctctccactgagcacagggg 384

                                                                       
Query: 185 acctgagtcacaagcccttgtctcttgttggcaattcatacaccaagtagccctgttaac 244
           ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 acctgagtcacaagcccctgtctcttgttggcaattcatacaccaagtagccctgttaac 444

                                                                       
Query: 245 agttgactttgcagctctctctgacgacactgcagttctatctcagcagaactgtctgta 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 agttgactttgcagctctctctgacgacactgcagttctatctcagcagaactgtctgta 504

                                                                       
Query: 305 actccagttcaagagggtcttacaccctcttaatacctcttcaggcaatatacacacaag 364
           ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 505 actccagttcaagagggtcttacaccctcttaagacctcttcaggcaatatacacacaag 564

                                                                       
Query: 365 gagcacatgcatacatgcaagcaaaacaccatacaagaaacagctatactaagacataca 424
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 565 gagcacatgcatacatgcaagcaaaacaccatacaagaaacagctatactaagacataca 624

                                                                       
Query: 425 gtttcatttagtgccaagcagtggcccttggaagcagtaatgaacataagacctagtgga 484
           |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 625 gtttcatttagtgccaagcagtggcccttggaagcagtaatgaacacaagacctagtgga 684

                                                                       
Query: 485 tccattttaacactggagaacccattacctggcttcctttaagaacagaagttctatcgt 544
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 685 tccattttaacactggagaacccattacctggcttcctttaagaacagaagttctatcat 744

                                                                       
Query: 545 atgctacctttaaaagatagtaattattttacttgtcttaaaatgtatgaagatttaaaa 604
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 745 atgctacctttaaaagatagtaattattttacttgtcttaaaatgtatgaagatttaaaa 804

                                                                 
Query: 605 ttccttcaatccaaaatttgtttctagaaaatattcccttttaaggacatctgt 658
           ||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 805 ttccttcgatccaaaatttgtttctagaaaatattcccttttaaggacatctgt 858


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 29
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 658
Length of database: 1058
Length adjustment: 10
Effective length of query: 648
Effective length of database: 1048
Effective search space:   679104
Effective search space used:   679104
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)