Query= MSMg01no178_p16.b1 MSMg01no178_p16.b1 CHROMAT_FILE:
MSMg01no178_p16.b1 PHD_FILE: MSMg01no178_p16.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:51:52 2005
(521 letters)
>mm_chr6_98192686_98193605
Length = 920
Score = 961 bits (497), Expect = 0.0
Identities = 512/517 (99%), Gaps = 1/517 (0%)
Strand = Plus / Minus
Query: 5 gaattcttagctctcccgaagctgccttaattcttctgtgttattagagtatcatcactt 64
||||||||||| | | ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 720 gaattcttagcac-ctcgaagctgccttaattcttctgtgttattagagtatcatcactt 662
Query: 65 agcacattccagctcaaaaggaccctaggggcatagagaggactagagacaaccctcaga 124
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 661 agcacattccagctcaaaaggaccctaggggcatagagaggactagagacaaccctcaga 602
Query: 125 aggatttgccaaggcttcttgctcacagccaaatacagctgtggcagtttggcctgcggg 184
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 601 aggatttgccaaggcttcttgctcacagccaaatacagctgtggcagtttggcctgcggg 542
Query: 185 tcttggatcatctcctaccgcctttattccaggtttaggaggcagggcggatgttctgac 244
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 541 tcttggatcatctcctactgcctttattccaggtttaggaggcagggcggatgttctgac 482
Query: 245 agcagtaattagagatgatgccaggggtgccaggtggttcaatagagaggatttcctgtg 304
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 481 agcagtaattagagatgatgccaggggtgccaggtggttcaatagagaggatttcctgtg 422
Query: 305 caaggaacttgttgcaaaggtgctaagagagttgaaaaggtcagggcagcaaacagtgga 364
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 421 caaggaacttgttgcaaaggtgctaagagagttgaaaaggtcagggcagcaaacagtgga 362
Query: 365 gtgacccacaaatccacaccctgagaaggctcttcataccctgtgccttttacaccaaca 424
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 361 gtgacccagaaatccacaccctgagaaggctcttcataccctgtgccttttacaccaaca 302
Query: 425 ctggactgagcttatagatatgtagcaactaaccagtactagacagtacttgattttatt 484
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 301 ctggactgagcttatagatatgtagcaactaaccagtactagacagtacttgattttatt 242
Query: 485 cagaaccatggggaggagggctggagagaggggcagg 521
|||||||||||||||||||||||||||||||||||||
Sbjct: 241 cagaaccatggggaggagggctggagagaggggcagg 205
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 25
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 521
Length of database: 920
Length adjustment: 10
Effective length of query: 511
Effective length of database: 910
Effective search space: 465010
Effective search space used: 465010
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no178_p16.g1 MSMg01no178_p16.g1 CHROMAT_FILE:
MSMg01no178_p16.g1 PHD_FILE: MSMg01no178_p16.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:51:52 2005
(576 letters)
>mm_chr6_98109192_98110167
Length = 976
Score = 994 bits (514), Expect = 0.0
Identities = 568/604 (94%), Gaps = 28/604 (4%)
Strand = Plus / Plus
Query: 1 ctgaacacatgtgggaatttaggttaacctggaagccatgtttacataaatatctttgca 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 ctgaacacatgtgggaatttaggttaacctggaagccatgtttacataaatatctttgca 260
Query: 61 gtgagcaggatatcttccctgagctggtagtggagtattagaagcccttgcagaacttac 120
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 261 gtgagcaggatatcttccctgagctggtagtggagtattagaagcccttgcagagcttac 320
Query: 121 cctgatttggaatgtatccaggcttggggtatcataagacaaagataagtcaggaggtat 180
||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 321 cctgatttggaatgtatccaggcttggggtatcataagacaaagataagtcagaaggtac 380
Query: 181 cctttctctttctcctcttctggtcataccaaacatcatcattggcatggaggatatcta 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 cctttctctttctcctcttctggtcataccaaacatcatcattggcatggaggatatcta 440
Query: 241 acaagatacctcccaaacttagtgacgccctccaaccccaatgggtcttgttgaaataga 300
||||||||||||||||| |||||||| |||||||||||||||||||||||||||||||||
Sbjct: 441 acaagatacctcccaaatttagtgacaccctccaaccccaatgggtcttgttgaaataga 500
Query: 301 tcggagttcctttgtaccctatgtatgtttatatatatatatata--------------- 345
|||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 tcggagttcctttgtaccctatgtatgtttatatatatatatatatatatatatatatat 560
Query: 346 -------------ctttttattaggtatttagctcatttatatttccaatgctatcccaa 392
|||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 atatatatatatactttttattaggtatttagctcatttatatttccaatgctatcccaa 620
Query: 393 aagtcccccatacccactcacccccactcccctacccacccactccccctttttggccct 452
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 aagtccctcatacccactcacccccactcccctacccacccactccccctttttggccct 680
Query: 453 ggcgttcccctgtactagggcatataaagtttccaagtccaatgggcctctctttccagt 512
||| |||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 ggcattcccctgtactggggcatataaagtttccaagtccaatgggcctctctttccagt 740
Query: 513 gatggccgactaggccatcttctgctacatatgcagctagagatatgagctctgggggta 572
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 741 gatggccgactaggccatcttctgctacatatgcagctagagatatgagctctgggggta 800
Query: 573 ctgg 576
||||
Sbjct: 801 ctgg 804
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 36
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 576
Length of database: 976
Length adjustment: 10
Effective length of query: 566
Effective length of database: 966
Effective search space: 546756
Effective search space used: 546756
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
