CTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXTCCAAGAGGATCCGCGGA
ATTCCAAACAATTACGCGCACACATTGTTCATGTTTGGTTTTCATGTGGT
GTAATAAAACATTCGCCAAAGCTATCTTGGAACAGGAAAGGATTTCCTTA
ATTTTTCATATTCTAATCTGCCATTGAACAAAGCCAGGGCAGGAACTGAA
GGCTGGAAACTGGAAGTAGTAACTGAAGTAGCGACCACCGAGGCATGGTG
CTTACTGGCTTGCTTCCCTAGACTTCATCATCTACCTGTTTCAACAACCC
AAGGTCACTTGCCTGGGATGTTATCACTCAGTGTGCTAAACCCTCTGCAT
CTATTTGTTATCCAGAAAATGTCCCCACAGACATGCTCACTGGCCCATTT
CATGAATCTAATTCCTTAACAAAGATTCCCTCTTCTAGATATGTTTTGGT
TTCTGTCAAGTTGACAAAATCTGAGCAGTACATGTATCATTTTAAAGGTT
GTTGTTTGTAGCATTTTTTGGAAAACTGATAAACATGTTGGAAATGGGTC
AGAAAGTCATTCACACAAAAAGTTATGCAATTGTACTTTATACTCACATT
CAAATACTTTGAAAACTTCTTTAAAATAAGTTCCTATATCTAGAATTTCT
ACTATTTCTTTACAGAATATGTACTTTAAAAAAATATGTGCCTGAAGAAG
CATAAAAATGCTTGGTAAATGCTGTCAAAATAAAGCACGGCAN

CGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXAATTCCCAGCAACCATGTAGTAGC
TCACAACCATTTATAATGGGATACCATGCCTTCTTCTGGTGTGTCTGAAG
ACAGTTAGATGTGCTCATCTAAATAAAATATTTTTCAAAAGAAAGTAAGA
GAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAAGGAAG
GAAGGAAGGAAGGAAGGAAGTCNCCCCCTTCCTTCCTTCCCTTTTTTTTT
TTCCTCTCCTCCCCTTCCCCCCTTTTTTTTTTTCCNCCTTCTCCCCCCCT
TTCCCCTCCCCCTTTTTTTTCCCCCCCCCCCCCCCCCCCTTCCTTCCTCC
CCCTTTTTTTCCTCTTTTGTCGTCCCCCCCCCGCGCGTGGTCCCTCCCTT
TCTTTGTTCCGACTGTTTTTCTTCTTTTTTCCTATCCTTCTTTCTTTGCC
CCTTTTCCCCTCTCATTTTTTTATCCTTTTCCTCTTTCTCCCCATCCCCT
TTCTCCCTTTCTATCCTCCGCTTCTTTTTTTTACTTCTTTCTCCACCTCC
CCCTTTCCTTTCCTCTCCCCCTATCCACTCCTTTCCCCCTTATTCCCCTC
CCGATTTTCACCCCTTTTTTTTTTCCCGCCCCCCCTCCTTATATCTCTAC
TTCCTATCCTTCCGTTTCTTCTTTTTCCCGCTGCCCTCTCCTTTACTTTT
TCACCCTCCCGCCCCTCTCCTTTTCCCCTTTTCCATCTTCTTCACCCCCT
TCTTCCTTTTCCTTTTCCCCTTTTTTCTTTTTTCTTTTN

Query= MSMg01no179_a18.b1 MSMg01no179_a18.b1 CHROMAT_FILE:
MSMg01no179_a18.b1 PHD_FILE: MSMg01no179_a18.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:51:57 2005
         (673 letters)



>mm_chr6_76244460_76245530
          Length = 1071

 Score = 1139 bits (589), Expect = 0.0
 Identities = 652/673 (96%), Gaps = 6/673 (0%)
 Strand = Plus / Plus

                                                                       
Query: 2   acattgttcatgtttggttttcatgtggtgtaataaaacattcgccaaagctatcttgga 61
           |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 202 acattgttcatgtttggttttcatgtggtgcaataaaacattcgccaaagctatcttgga 261

                                                                       
Query: 62  acaggaaaggatttccttaatttttcatattctaatctgccattgaacaaagccagggca 121
           |||| ||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 262 acagaaaaggatttccttaatttttcatattctaatctgccattgagcaaagccagggca 321

                                                                       
Query: 122 ggaactgaaggctggaaactggaagtagtaactgaagtagcgaccaccgaggcatggtgc 181
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 322 ggaactgaaggctggaaactggaagtagtaactgaagtagcgaccaccgaggcatggtgc 381

                                                                       
Query: 182 ttactggcttgcttccctagacttcatcatctacctgtttcaacaacccaaggtcacttg 241
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 382 ttactggcttgcttccctagacttcatcatctacctgtttcaacaacccaaggtcacttg 441

                                                                       
Query: 242 cctgggatgttatcactcagtgtgctaaaccctctgcatctatttgttatccagaaaatg 301
           |||||||||  |||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 442 cctgggatggcatcactcagtgtgctaaaccctctgcatctatttgtcatccagaaaatg 501

                                                                       
Query: 302 tccccacagacatgctcactggcccatttcatgaatc-taattccttaacaaagattccc 360
           ||||||||||||||||||||||||||||||||||| | ||||||||||||||||||||||
Sbjct: 502 tccccacagacatgctcactggcccatttcatgaa-cgtaattccttaacaaagattccc 560

                                                                       
Query: 361 tcttctagatatgttttggtttctgtcaagttgacaaaatctgagcagtacatgtatcat 420
           ||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||||
Sbjct: 561 tcttctagatatgttttggtttctgtcaagttgacaaaatctgagcagtgcatatatcat 620

                                                                       
Query: 421 tttaaaggttgttgtttgtagcattttttggaaaactgataaacatgttggaaatgggtc 480
           |||||| || |||||| |||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 621 tttaaatgtcgttgtt-gtagcattttttggaaaactgataaacacgttggaaatgggtc 679

                                                                       
Query: 481 agaaagtcattcacacaaaaagttatgcaattgtactttatactcacattcaaatacttt 540
           ||||||||||||||| ||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 680 agaaagtcattcacataaaaagttatgcaattgtactttatactcacattcaagtacttt 739

                                                                       
Query: 541 gaaaacttctttaaaataagttcctatatctagaatttct-actatttctttacagaata 599
           |||||||||||||||||||||||||||||||||||||| | |||||||||||||||||||
Sbjct: 740 gaaaacttctttaaaataagttcctatatctagaattt-tgactatttctttacagaata 798

                                                                       
Query: 600 tgtactttaaaaaaatatgtgcctgaagaagcataaaaatgcttggtaaatgctgtcaaa 659
           |||||||||||||| |||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 799 tgtactttaaaaaa-tatgtgcctgaagaagcataaaaatgcttggtaaattctgtcaaa 857

                        
Query: 660 ataaagcacggca 672
           |||||||| ||||
Sbjct: 858 ataaagcatggca 870


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 28
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 673
Length of database: 1071
Length adjustment: 10
Effective length of query: 663
Effective length of database: 1061
Effective search space:   703443
Effective search space used:   703443
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)