Query= MSMg01no179_a19.b1 MSMg01no179_a19.b1 CHROMAT_FILE:
MSMg01no179_a19.b1 PHD_FILE: MSMg01no179_a19.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:51:57 2005
(537 letters)
>mm_chr6_61548496_61549432
Length = 937
Score = 980 bits (507), Expect = 0.0
Identities = 528/535 (98%), Gaps = 2/535 (0%)
Strand = Plus / Plus
Query: 4 ggaattctcttttctgtccctttgtctcaatactatgagattatacccaaggtgtgcata 63
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 204 ggaattctcttttctgtccctttgtctcaatactatgagattatacccaaggtgtgcata 263
Query: 64 accaggcaagttatgttggtaacagactagtacaagatgtcagatctcagtaacagtaat 123
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 264 accaggcaagttatgttggtaacagactagtacaagatgtcagatctcagtaacagtaat 323
Query: 124 cagtctgatcttccattgatatttataagaagtatgctaaggaagccagaactcagtgta 183
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 324 cagtctgatcttccattgatatttataagaagtatgctaaggaagctagaactcagtgta 383
Query: 184 cctagaatctaggttacctaattgacctggagatgccttcactctttttaaattatattt 243
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 384 cctagaatctaggttacctaattgacctggagatgccttcactctttttaaattatattt 443
Query: 244 ccaccataccatgtaggggcctcacgtgatgatggtaatgttcaggatgcagctcacctc 303
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 444 ccaccataccatgtaggggcctcacatgatgatggtaatgttcaggatgcagctcacctc 503
Query: 304 actggccccactgtgtatcaaagaacacaactgagctcataccctcagttacactttttt 363
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 504 actggccccactgtgtatcaaagaacacaactgagctcataccctcagttatactttttt 563
Query: 364 ccccagggcactgttttcctatttc-caagccaacagagaagctagtatcatctcaggtt 422
|||||||| ||||||||||||| | ||||||||||||||||||||||||||||||||||
Sbjct: 564 ccccagggtactgttttcctata-cgcaagccaacagagaagctagtatcatctcaggtt 622
Query: 423 gatgtttttgacaaaaaggggctttggagagcagtggactgcccatcaagcctcattgat 482
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 623 gatgtttttgacaaaaaggggctttggagagcagtggactgcccatcaagcctcattgat 682
Query: 483 tttcttttgtacatagtcaatgatttaagtaaattcccagaatttagtgactaca 537
|||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 683 tttcttttgtacatagtcaatgatttaagtaaattcccagaatttagtgactaca 737
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 23
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 537
Length of database: 937
Length adjustment: 10
Effective length of query: 527
Effective length of database: 927
Effective search space: 488529
Effective search space used: 488529
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no179_a19.g1 MSMg01no179_a19.g1 CHROMAT_FILE:
MSMg01no179_a19.g1 PHD_FILE: MSMg01no179_a19.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:51:57 2005
(644 letters)
>mm_chr6_61659138_61660182
Length = 1045
Score = 1181 bits (611), Expect = 0.0
Identities = 639/653 (97%), Gaps = 9/653 (1%)
Strand = Plus / Minus
Query: 1 ttagctattatcatcttctaagagtccatgtgccttgta-tttttgtgaatgctctgaag 59
||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||
Sbjct: 695 ttagctattatcatcttctaaaagtccatgtgccttgtattttttgtgaatgctctgaag 636
Query: 60 gtcataaatacttgatggggaatcacttttactctaagaatcttttttaacaagctattt 119
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 635 gtcataaatacttgatggggaatcacttttactctaagaatctttttaaacaagctattt 576
Query: 120 caaaaaacagtagatttctttaataaaggaggtataggcacaaaaactaaaa-------- 171
|||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 575 caaaaaacagtagattgctttaataaaggaggtataggcacaaaaactaaaaaaaaaaag 516
Query: 172 aaaagacaacttcatgaaatactaaatctgatgaaaacagaatatgagaaactgaaattg 231
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 515 aaaagacaacttcatgaaatactaaatctgatgaaaacagaatatgagaaactgaaattg 456
Query: 232 tgcccaccagcttctcaacaaaacttactacagtcctatttttatttagtatgcactgaa 291
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 455 tgcccaccagcttctcaacaaaacttactacagtcctatttttatttagtatgcactgaa 396
Query: 292 aaaaatgttaagatggctataggaagatgggagtggtgccatatgcctttaatcccagca 351
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 395 aaaaatgttaagatggctataggaagatgggagtggtgccatatgcctttaatcccagca 336
Query: 352 cttgggaggcagaggcaggcggatttctgagttcgaggccagcctggtctacagagtgag 411
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 335 cttgggaggcagaggcaggcagatttctgagttcgaggccagcctggtctacagagtgag 276
Query: 412 ttccaggacagcctggtctacacagagaaaccctgtctcaaaaaacaaaacaaaataaaa 471
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 275 ttccaggacagcctggtctacacagagaaaccctgtctcaaaaaacaaaacaaaataaaa 216
Query: 472 caaaacaaacaaaaacaaaacaaaaacaaaaacaaaaaaggctgtaggagtgtaggagat 531
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 215 caaaacaaacaaaaacaaaacaaaaacaaaaacaaaaaaggctgtaggagtgtaggagat 156
Query: 532 gtagccttatttcctaaaatgtggtcaatatctattttgaatgtaagtcttcacacaaac 591
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 155 gtagccttatttcctaaaacgtggtcaatatctattttgaatgtaagtcttcacacaaac 96
Query: 592 aacaatgaaaatgaactcattaaacttaaaataatatactctagctactgatt 644
|||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 95 aacaatgaaaatgaactcattaaacttaaaataatatactctagctactgatt 43
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 43
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 644
Length of database: 1045
Length adjustment: 10
Effective length of query: 634
Effective length of database: 1035
Effective search space: 656190
Effective search space used: 656190
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
